Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2543 ATGCCTCTTTTAAAAAGGAAGCCTTTTGTCTTGGCTGAGCTGCCTAAGGATTTGGAGCCCCATGAGCTTGTCCATCAAGTTCGATTTACGAAAGAAATATTTCGAGATTATCATGACTATTTGAACCGTATAAATTTGTATCGCCAGAGAGTTTGGACATGTAAGGTCACTGGGAAAACTAACTTGACTTATGAAGAGGCTATGGTGTCTGAAAGGCGTGCCACTGAAAAAGTCCAACAAATTCCCAAAGAATTAATGGCCCCTGCACTAAGGATTATTCAATACAGCATGCTTCCTTTGAGGGAACTCGCTGAAGCAATAGCTGACAAATTGCAGGAACAAGTTTATGTGGGTGCTGAGCTGCATGGAAAAAAGGATGATGGAGAGCATCCCTGCAAAATATTGAAAGTCATGCAGGAAGGAGTTGATGAATTCCGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAAAACAGTTGAAAAGGCTGAAGTCAGTGCCAAGGATTTGGTGCAGAAGAAATTTCCTTTTAGCAGGAACATCTTGAAATCTTTTATTCGGGAATCTACATATCGTAATGCTCCTTGGGTAATACATGATGAATTGGCACAAAATTATGGAATCTCAACTGATATCCCAGAGGAGTTAAAAGGAAGAGCTTTCTTCAACAACGGACTTTTAATTTGCAACAAGAAAAGGAAAATTGAGGATTTAAATGGAGATGCTGAAAATTGCAAAAGGAGGAAATCAGATCAATCAAAAAATAATGGCTCCCATTTAGTGAAAGAAAATGGCCAATGTAAGGAAGAACCTATCAAATATCCGATTGATGATTTATTGGTGGAGCCTAGTCCAAATGATCCTGTTTTTGCTGATCGTCCTTCTCCATCAAGAGACTTCAATGTTCCAATTCATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAGGCTGTTGCGCTTGTCACCCTACTCTCTGGAAGATTTTGAAAACTCAATCTGCCACAAGGAAAGCAACGTGGTTCTCCTTATGGAATCTCATGCAGCACTCCTTCGGGTGCTCATGAAAGATGATGGTGAGTACGCTTCAGCTGTACAGAAAAGAAAACGGAAGTTTAAGATTACAATGATTAATTGGCAAGAATATTTATGCGATTTTCTAGAAATGATCAATGTTCCTGGGTTACGGCAGTTTGAAGCTACCATAAAAAGGGGACATTATGGCCTCGTTGATATCAATGCTAAACTAGAAATATTGTGCGAATTGGTCAATCAAGTTCTTGAAACCTCCATTTTTAGGGAAAGGTTGGACGAGGTTATTGAACAGCGGCAGGCACTTGGTGCTACTAGAAGAGGAGAAGCACTAGAAGATGGTAGGAAAAGAAGGGAAGAAAAGGAACGGTTGAAAGCTGAGTTTGAAAGAAATGGTAGTATGAATGGGCACTTTCAAATAAATGCAGCAACTGTCTCAACAAAAAATAATCACAATAGAGAGAACGGAGATATGAGAAAGAAAAGAAATGGAGAGAAGGAACCATCTAGGCAGGGGGATGCTTTGGGTGGAAGAATTTGTTCTAAATTTCTGAGCAGCATGGATAAGCATTCGAATGGTGCATCCAAAAAGTCATCTAAGAAGCTGAGTTTAGAACTGAAAGAACCAACAGAAAATGGAAATGAATCATCCAGAAAGGAATCACAGAAGCAATTAAAGGGGGAGAAGGATCCATCAGAGAAGAATAGTATAGAAGAGAGGAGAGAATATTTTGAACGAGAGATGGAAAAACGATTTGTTCGTACAAGTCCCCTTGGCAAAGACAGGCATTACAGCAGGTATTGGTGGTTTCGCCGTGATGGGAGGATCTTTGTAGAAAGTTCTGATTCTAAGGAGTGGGGCTACTACAGCACCAAGGAAGAGCTTGATGCATTGATGAGGTCACTGAATTGCAAGGGTGAGCGGGAAAGAGAATTGCAAAAGCAACTGGAAAAATATTATGCTAGAATATGTACGGAACTCCAGAAGAGATCAAAGGATCAGATACAGCAGATTGCACTAGATGAGTCTGTGCTCCGAAGGTCTACTCGTGTTCGAGCGCCACCCAGAGAAAATCCTGCCAATGCTTTCCTCAAATATGTTAACAAGTGGAAGGAAGAGTAG 2166 0.4044 MPLLKRKPFVLAELPKDLEPHELVHQVRFTKEIFRDYHDYLNRINLYRQRVWTCKVTGKTNLTYEEAMVSERRATEKVQQIPKELMAPALRIIQYSMLPLRELAEAIADKLQEQVYVGAELHGKKDDGEHPCKILKVMQEGVDEFRYEVAWLDKNKKTVEKAEVSAKDLVQKKFPFSRNILKSFIRESTYRNAPWVIHDELAQNYGISTDIPEELKGRAFFNNGLLICNKKRKIEDLNGDAENCKRRKSDQSKNNGSHLVKENGQCKEEPIKYPIDDLLVEPSPNDPVFADRPSPSRDFNVPIHCVGDLLMVWDFCTSFGRLLRLSPYSLEDFENSICHKESNVVLLMESHAALLRVLMKDDGEYASAVQKRKRKFKITMINWQEYLCDFLEMINVPGLRQFEATIKRGHYGLVDINAKLEILCELVNQVLETSIFRERLDEVIEQRQALGATRRGEALEDGRKRREEKERLKAEFERNGSMNGHFQINAATVSTKNNHNRENGDMRKKRNGEKEPSRQGDALGGRICSKFLSSMDKHSNGASKKSSKKLSLELKEPTENGNESSRKESQKQLKGEKDPSEKNSIEERREYFEREMEKRFVRTSPLGKDRHYSRYWWFRRDGRIFVESSDSKEWGYYSTKEELDALMRSLNCKGERERELQKQLEKYYARICTELQKRSKDQIQQIALDESVLRRSTRVRAPPRENPANAFLKYVNKWKEE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2543 721 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Prci4g2543 721 Coils Coil 459 479 - -
Prci4g2543 721 SMART testlast3 303 364 IPR018501 -
Prci4g2543 721 Coils Coil 234 254 - -
Prci4g2543 721 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 601 667 IPR028941 -
Prci4g2543 721 Pfam DDT domain 304 361 IPR018501 -
Prci4g2543 721 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 719 - -
Prci4g2543 721 MobiDBLite consensus disorder prediction 500 520 - -
Prci4g2543 721 MobiDBLite consensus disorder prediction 244 263 - -
Prci4g2543 721 ProSiteProfiles WAC domain profile. 22 129 IPR013136 -
Prci4g2543 721 MobiDBLite consensus disorder prediction 474 586 - -
Prci4g2543 721 MobiDBLite consensus disorder prediction 482 499 - -
Prci4g2543 721 MobiDBLite consensus disorder prediction 548 586 - -
Prci4g2543 721 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2543 Prci-Chr4 37820183 37826992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2543 589 677 Homeobox Transcription Factor Family AT5G44180 36.735 4.71e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Prci4g2543 WAC_Acf1_DNA_bd 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2543 - - qsa:O6P43_023448 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2543 4 37820183 37826992 Prci4g2543 4 37820183 37826992 ECH