Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2525 ATGGGGGACTCAAGCGCCCAGGCTTCAAGCCTCAGGAAGTTTCCAGCTGAAATTTTCTTGGATATCAAAGAGCCTGACAACATGCTTCGCCCAAAATTTATTGGAGACACTCTAAAATTAATGACAAGGTTACTGCTATTGCTCAGTGTCTTGAGACTCAGTTCTGCAATCACAGATCCTGATGTGGAAGGCGAAGCTTTGGTTGAAGTTAGGAAGGCTCTCCACGATCCCAACCATCAACTAACAGATTGGAATTATTTTTTTGTGTCTGCTTGCGTTAGTTGGTCCCATGTCACTTGTAGAAACGGACACGTCATAGGCCTGAGCCTGGCTTCTTATGGACTTTCTGGAGCAATATCTCCTTCAATCACCAGATTGAAATATTTGACTAGCTTGGAGTTGAAGAACAACAAGTTCTCAGGCCCCTTACCTGATTATATTGCCAATCTGACACAGATACAATATCTAAACCTTGGAGATAATCATTTTAGTGGTTCTATTCCAGCTAGCTGGGGCAAGCTTCGAAATCTAAGGAATCTGGATCTTTCATCTAATGTTCTAACTGGAGATATCCCAATGCAACTCTTTTCAGTTCCAAGCTTCAACTTTTCAAATACACCCCTTCATTGCGGATCACACTTGGAGAGGCCTTGTGTTTCTAATTCTGCCATCCCAGCTTGTACCAACAAATCAATAGTTGCAGCGGTTGTGAGTTTTGCAAGTTGTGGTGCATTAGCACTTCTTTGTCTTGGGGCTATCTTTGCACATAGATACCTATACGTACGAAGATACGCAAATGAAATCTTTTTTGATGTTTCAGGTGAAGATGAAAGAAACATTTCCTTGGGGCAACTGAGAAGATTTTCTTTCCGAGAGTTACAACTCGCCACTAAGAATTTCTGCGAGAACAATGTGATAGGCCAAGGAGGCTTTGGAAAAGTTTACAAAGGAGTACTCTTAGATAACACTAAAGTCGCTATCAAACGTCTGGTTGATTATAATAACCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTAATAAGTGTTGCAGTTCACAGGAATCTCCTTCGCTTAATCGGATTCTGCACAACCCCTACCGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTAAGCGTAGCGCATCGCTTGAGAGATTTGAAACCTGGTGAGAAAGGCTTAGACTGGCCAACAAGGAAGCGCGTGGCCTTTGGTACAGCACATGGCTTGGAGTACCTCCATGAGCAATGTATTCCCAAGGTTATACACCGAGATCTGAAAGCTGCAAACATCTTATTAGACGATGACTTTGAAGCTGTACTTGGAGATTTTGGTTTGACTAAGCTTGTTGATACAAGGCTGACACATGTCACCACTCAGGTGAGAGGCACGATGGGTCATATTGCCCCAGAATACCTGTCCACAGGAAAATCATCAGAGAAGACTGATGTCTTTGGATATGGCATCACACTTCTTGAACTTGTCACCGGTCAGCGTGCGATAGACCTGTCTCGGCTTGAAGAGGAGGAGGATGTTCTTCTGCTTGATCATATAAAGAAGTTACTGAGAGAGAACAGGCTAGAGAATATAGTGGATAGGAATCTGGAGAGTTACGATCCAAAAGAAGTAGAAAGAATAGTTCAAGTAGCATTGCTTTGCACACAAGGGATGCCAGAGGACAGGCCAAGCATGTCAGAGGTAGTGAATATGCTTCAGGGTGTGGGTTTGGCAGAGAGATGGGCTGAGTGGGAGCAATTGGAAGAGATCAGTAATCAGGAATTCTCATCACTTTCTCATCACTTTGCTTGGGCTGATGAATCCACTCATCAAGAGGCTATACAGCTTTCCACGGCGAGATAA 1866 0.4341 MGDSSAQASSLRKFPAEIFLDIKEPDNMLRPKFIGDTLKLMTRLLLLLSVLRLSSAITDPDVEGEALVEVRKALHDPNHQLTDWNYFFVSACVSWSHVTCRNGHVIGLSLASYGLSGAISPSITRLKYLTSLELKNNKFSGPLPDYIANLTQIQYLNLGDNHFSGSIPASWGKLRNLRNLDLSSNVLTGDIPMQLFSVPSFNFSNTPLHCGSHLERPCVSNSAIPACTNKSIVAAVVSFASCGALALLCLGAIFAHRYLYVRRYANEIFFDVSGEDERNISLGQLRRFSFRELQLATKNFCENNVIGQGGFGKVYKGVLLDNTKVAIKRLVDYNNPGGEAAFQREVQLISVAVHRNLLRLIGFCTTPTERILVYPFMENLSVAHRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCIPKVIHRDLKAANILLDDDFEAVLGDFGLTKLVDTRLTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEEEDVLLLDHIKKLLRENRLENIVDRNLESYDPKEVERIVQVALLCTQGMPEDRPSMSEVVNMLQGVGLAERWAEWEQLEEISNQEFSSLSHHFAWADESTHQEAIQLSTAR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2525 621 Gene3D Ribonuclease Inhibitor 60 220 IPR032675 -
Prci4g2525 621 Pfam Protein kinase domain 303 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2525 621 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Prci4g2525 621 Gene3D Transferase(Phosphotransferase) domain 1 377 593 - -
Prci4g2525 621 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Prci4g2525 621 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Prci4g2525 621 FunFam Somatic embryogenesis receptor-like kinase 1 377 593 - -
Prci4g2525 621 Pfam Leucine rich repeat N-terminal domain 62 100 IPR013210 -
Prci4g2525 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 45 584 - -
Prci4g2525 621 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Prci4g2525 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Prci4g2525 621 SMART serkin_6 300 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2525 621 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2525 621 SUPERFAMILY Protein kinase-like (PK-like) 279 573 IPR011009 -
Prci4g2525 621 FunFam Nuclear pore complex protein NUP107 61 207 - -
Prci4g2525 621 SUPERFAMILY L domain-like 64 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2525 Prci-Chr4 37660546 37664727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2525 37 621 Receptor kinase-like Gene Family AT5G10290 54.412 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci4g2525 Pkinase 8.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2525 - - pcin:129307818 1176