Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2434 ATGGCTGGCAAAAGTAGCAAGAAACCACTAAGCCTCAACGATAGCCATTATCGATTCCTCCAAGACCTTTCTGCACCTCCGAAGCCCTCCTCGAAGGCATCTGATGACGAAGATGAGTCGTCGCCGATAATGCTCAAAGGCAGAAGGCAGCAGCAGGGCAAAGCTTTTTCCAGGGATGACAAAAACGAGGAAGATGATAGCATCCCTCGATTTTCTGCGATCACCGACTTCGATTCTTCTATCGACGAAAAGCCGATCAAGGTAGAAGATCGACGCCTTCTCTGTACTGTCTCGCCAAAGCAAAATAATAAAGATAAAGATGATAATATTCCCCAGTCTAAAGATACGACCGGCTTTGAAACCCACAAAGGGGAAAAGAAAACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTGTCATGTGCAGACAATGATAATACTGATAAAATGGTGGCGCTCGATGACTCGGAGGTTTCTGACCTTGTGGATTTTGATTCACCCCCTTTGCCGACAAAAAATGCGACTGAGATTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGATATATTAGATGAGTTGAGCTCGAAGTTTGATATTCTGTCAATTGAGAAGAAGAGGGTACCTAAATCAACGCAGACATTTGAAAATTGTTCAGCATTGGTGATAGGAAATGAAACTACGGAAGATAAGAATGTTGATTATGCCAGTGCAGATTCTTCATTCTCAGCTCAACAGGACCCCTGTGACAGTTTATCTGATGCTACTATCAGTGGAGGCATTGAACTTGTAGAAGATGATTCGGACGATTCTGTAGAATTGCTGGATCATTTTGATTCTGAGGATTTTAATTCTATAACTATGAATGGCCCACATTCCACATACAAGTTGCCAGGCAAAATTGCAAAAATGTTGTATCCGCATCAACGTGATGGTTTGAAGTGGCTTTGGTCTCTGCATTGTCAGGGTAAAGGTGGAATCCTGGGGGATGACATGGGTCTGGGGAAAACAATGCAAATTTGTAGCTTTTTAGCTGGTTTATTCAATTCACATTTGATCAAAAGGGCATTGGTTGTGGCCCCAAAAACCTTACTTCCCCACTGGATCAAAGAACTATCTGCTGTTGGTCTTTCTCAGAAGACGAGAGAATACTTTGGAACATGTACTAAAGCCCGAGAGTATGAACTTCAATACATACTTCAGGATAAAGGTGTTCTTCTTACAACATATGATATTGTTCGCAATAATTCTAAATCATTACGGGGGGATTATCTATCTGATGATGAGGAAGGTGAAGATGGCCCCACATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTAGAGATACCAAGTGCCCACCGCGTAATCATCAGTGGCACGCCATTGCAAAATAATCTGAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGCGATAAGAAATGGTTCAAAGAAAATTTTGAGTCAGCTATACTTCGTGGAAATGACAAAAAAGCTTCTGAGAGAGATAAGCGTGTTGGTTCTTCTGTTGCAAAGGTGCTCAGAGATCGTATTCAGCCCTACTTTTTAAGACGGCTGAAGAGTGAGGTTTTTAATCAAGATAACAAGAATACAGCGACGAAACTTTCTCAAAAACGGGAGATTATCGTGTGGCTACAATTGACTAGTATTCAGAGATATCTTTATGAAGCGTTTCTAAGGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCGCTTGCTGCACTTACGATATTGAAGAAAATTTGTGATCACCCGCTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCTGAAGAGGTTAACGTTGCAGAGAAATTGGCAATGCACATAGCTGATGTTGCTGACACAGACAAGTTCAAAGCTGAGCATGACGTCTCATGCAAAATATCTTTCATAATGTCATTATTGGATAATTTAATCCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTGTAACGTCCAAAGGTTATGAATTTTTACGTATTGATGGAACAACAAAAGCTAGTGATAGAATAAGGATTGTTAATGATTTCCAAGAAGGTGCTGCGGCTCCCATTTTTCTCTTGACATCTCAAGTTGGTGGTTTAGGGCTGACACTTACTAAGGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGATCGTGCATATCGTATTGGCCAAAAGAAAGATGTTCTTGTGTATAGATTAATGACATGCGGAACCGTTGAAGAAAAAATATACAGGAAGCAGGTATACAAGGGGGGATTGTTTAAAACGGCAACAGAGCATAAAGAGCAAATTCGGTACTTCAGCCAGCAGGATCTCCGAGAGCTTTTCAGTCTCCCAAAGGAGGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAGGAGGAGCATGCTTGTGAAGATACAGTGGATGACTCGTTTAAAGCACACATAGAGTTCTTGAAAAGTCAAGGCATAGGTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAAACAGCACCAGTCCATGATGCACCTGGGGATGATGAAGTGCCAAGGAATCATGGGACCAGTTATGCTGGAGCGTCAGCATCAACTTCCCTTGAACGTCCTGTTGATGGAGCTGAGTTTGCTTTCAATCCAAAGGAAGTCAAATTGAACAAGAAAGGCTCTTCCCCAAATAGCGCTGGTAAATTGACTGAGTCTGAAATCAGGGATAAAATCAAACGGATTTCTCAAACACTAGCAAATAAGGCAATGATTTCTAGATTACCTGATAGGGGAGAAAAACTACAGCAGCGGCTTGCCGAGCTAAATTCGGAGCTCAGCAAATTGAAGATGGAAGAAAGAGAAGTGATTGATTTGGATGATATAACTGGAGAATTTCAAAGGGTATTGAATGTGTAG 3039 0.4192 MAGKSSKKPLSLNDSHYRFLQDLSAPPKPSSKASDDEDESSPIMLKGRRQQQGKAFSRDDKNEEDDSIPRFSAITDFDSSIDEKPIKVEDRRLLCTVSPKQNNKDKDDNIPQSKDTTGFETHKGEKKTKVKMEGRRRLCKVSCADNDNTDKMVALDDSEVSDLVDFDSPPLPTKNATEIEKSQGRSEIRDILDELSSKFDILSIEKKRVPKSTQTFENCSALVIGNETTEDKNVDYASADSSFSAQQDPCDSLSDATISGGIELVEDDSDDSVELLDHFDSEDFNSITMNGPHSTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSHLIKRALVVAPKTLLPHWIKELSAVGLSQKTREYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGDYLSDDEEGEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRVIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENFESAILRGNDKKASERDKRVGSSVAKVLRDRIQPYFLRRLKSEVFNQDNKNTATKLSQKREIIVWLQLTSIQRYLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVADTDKFKAEHDVSCKISFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESVTSKGYEFLRIDGTTKASDRIRIVNDFQEGAAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHACEDTVDDSFKAHIEFLKSQGIGGVSHHSLLFSKTAPVHDAPGDDEVPRNHGTSYAGASASTSLERPVDGAEFAFNPKEVKLNKKGSSPNSAGKLTESEIRDKIKRISQTLANKAMISRLPDRGEKLQQRLAELNSELSKLKMEEREVIDLDDITGEFQRVLNV 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2434 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 493 IPR014001 -
Prci4g2434 1012 Pfam Helicase conserved C-terminal domain 663 775 IPR001650 -
Prci4g2434 1012 PANTHER SNF2/RAD54 FAMILY MEMBER 123 991 - -
Prci4g2434 1012 Pfam SNF2-related domain 309 613 IPR000330 GO:0005524|GO:0140658
Prci4g2434 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 835 IPR027417 -
Prci4g2434 1012 SMART ultradead3 301 501 IPR014001 -
Prci4g2434 1012 SMART helicmild6 692 775 IPR001650 -
Prci4g2434 1012 FunFam Protein CHROMATIN REMODELING 24 285 563 - -
Prci4g2434 1012 CDD SF2_C_SNF 655 786 - -
Prci4g2434 1012 Gene3D - 565 863 IPR027417 -
Prci4g2434 1012 MobiDBLite consensus disorder prediction 101 131 - -
Prci4g2434 1012 Gene3D - 283 564 IPR038718 -
Prci4g2434 1012 MobiDBLite consensus disorder prediction 884 911 - -
Prci4g2434 1012 Coils Coil 972 999 - -
Prci4g2434 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 543 IPR027417 -
Prci4g2434 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 825 IPR001650 -
Prci4g2434 1012 MobiDBLite consensus disorder prediction 52 71 - -
Prci4g2434 1012 MobiDBLite consensus disorder prediction 1 131 - -
Prci4g2434 1012 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2434 Prci-Chr4 37087987 37096638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2434 306 829 RAD5 or RAD16-like Gene Family AT1G02670 24.694 9.17e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci4g2434 SNF2_N 7.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2434 K20093 - gmx:100779283 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2434 4 37087987 37096638 Prci4g2434 4 37087987 37096638 ECH