Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2428 ATGAAAGATGAGAGCCCTAGCAACACGACCAATTTGCCAAGCACAGGCAGTCCTGAGAGCCCTTGCTTAAAATCATCATCATCATTATCACCAAACAAAGAACAAGATCGCTTCCTTCCCATCGCCAATGTGGGAAGGATCATGAAGAAAGTGATCCCTGCCAATGGCAAAATCTCAAAGGACGCTAAGGAAACTGTTCAGGAATGTGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGTCAGAGAGAAAAGAGAAAGACCATCAATGGCGATGACATCATCTGGGCCATCACAACCCTAGGCTTTGAGGACTACGTCGATCCTCTCAAGTCCTACCTTCAGAAATACAGAGAGATAGAAGGAGAGAAGCTTAACGTTCCCAAACAACAACGATCTGATCAACAAAGGCTTCACCACCACCACCACCACCACCATAATCAGGAACACAATAATGCTAACAATAACCCACCTTTAAACAATAATGTATATTCTTCAACAAGTCTCATTTCTCAGCCTCATCTTCCTCCTTATGTGCCCACGGATCAGACATTTTCCTTACCAACTTTCTCATCAAATTCATTTCAGAAACAATTACAGCCCCAAGACAATATGGATTCAGTGGGGCATTGGTAG 648 0.4444 MKDESPSNTTNLPSTGSPESPCLKSSSSLSPNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNVPKQQRSDQQRLHHHHHHHHNQEHNNANNNPPLNNNVYSSTSLISQPHLPPYVPTDQTFSLPTFSSNSFQKQLQPQDNMDSVGHW 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2428 215 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci4g2428 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Prci4g2428 215 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Prci4g2428 215 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Prci4g2428 215 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Prci4g2428 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci4g2428 215 MobiDBLite consensus disorder prediction 1 34 - -
Prci4g2428 215 SUPERFAMILY Histone-fold 35 152 IPR009072 GO:0046982
Prci4g2428 215 Gene3D Histone, subunit A 27 162 IPR009072 GO:0046982
Prci4g2428 215 MobiDBLite consensus disorder prediction 155 186 - -
Prci4g2428 215 MobiDBLite consensus disorder prediction 1 35 - -
Prci4g2428 215 MobiDBLite consensus disorder prediction 130 186 - -
Prci4g2428 215 FunFam Nuclear transcription factor Y subunit B-3 27 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2428 Prci-Chr4 37001420 37002844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2428 1 215 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.364 1.33e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci4g2428 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2428 K08065 - cave:132166417 275.789