Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2388 ATGATTAATGATAACCCAATCTGGAATACGAATATGACTTCTTCTAATTGGCCCATTACGTTCCCTCTCCGAACCCCAATATCTTTGGCATCGTCGTCGTCTTCTTCCTCTGCTTCTGGTTTTCTTACCAGTGACACGTTTGGGATCAACTTGGGACAAGAAGGAGAGGAAGAGGAAAGGGAAGAAGAAGAAGAGCTTGGAGCCATGAAGGAGATGATGTACAGGATCGCAGCTTTACAGCCCGCGGACATCGACCCCTCCACCATCAAGAAACCTAAGCGGCGGAACGTCCGGGTCAGTGACGACCCGTTAAGTGTCGCCGCCCGACACCGCCGTGAGAGGATCAGCGAGAAAATCCGAATTCTGCAGAAACTCGTCCCCGGAGGAACCAAGCTCGACACCGCCTCCATGCTCGACGAAGCCATTCGCTACGTCAAATTCTTGAAGAGACAAATCAGGTTGCTCCAATCTCAACCACCACCAGTTCCACCCCAACACTGCAACAATATGGCTACCATCACCTCCGCCACGCTCGCCGATTGGCCTTGTACACCAAACACACTACTCCCCACTTCCTCCCCCGCCTCCGCCAACGCCGGTGATAGCTCCTCCTGGTTTCACTATGAGGTAATTGATGAATTACTGAATAATTAG 654 0.5153 MINDNPIWNTNMTSSNWPITFPLRTPISLASSSSSSSASGFLTSDTFGINLGQEGEEEEREEEEELGAMKEMMYRIAALQPADIDPSTIKKPKRRNVRVSDDPLSVAARHRRERISEKIRILQKLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSQPPPVPPQHCNNMATITSATLADWPCTPNTLLPTSSPASANAGDSSSWFHYEVIDELLNN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2388 217 CDD bHLH_AtIND_like 100 155 - -
Prci4g2388 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 148 IPR011598 GO:0046983
Prci4g2388 217 MobiDBLite consensus disorder prediction 45 65 - -
Prci4g2388 217 Pfam Helix-loop-helix DNA-binding domain 109 148 IPR011598 GO:0046983
Prci4g2388 217 Coils Coil 138 158 - -
Prci4g2388 217 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 24 201 IPR045843 GO:0003700|GO:0006355
Prci4g2388 217 MobiDBLite consensus disorder prediction 87 105 - -
Prci4g2388 217 Gene3D - 105 160 IPR036638 GO:0046983
Prci4g2388 217 SMART finulus 105 154 IPR011598 GO:0046983
Prci4g2388 217 MobiDBLite consensus disorder prediction 86 105 - -
Prci4g2388 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2388 Prci-Chr4 36663792 36664808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2388 66 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 76.786 2.57e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g2388 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2388 - - pcin:129307933 239.195