Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2387 ATGAATACCAACCAGAATACTCATCCCTCCTTCACCAACAGCAGTGTTAACATTAGTAATAATCATCCAACTTGGAATATGAATCTTGAGCATATGGGTTCTGCTTGGCTTCCTCTTCAAACCCCAATATCTACCTCTTCATCTTCTGGTTTTCTCATCAGTGACATGTTTGGCATCAACTTGGGAAGAGAAGGAGAAGGAGAGGAGGAGGAGGAGGAGGAAGAAGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCCGCTTTGCAGCCAGTCGAGATCGATCCCTCCACCATTCGGAAACCTAAGCGGCGGAACGTCCGGATCAGTGACGACCCACAGAGTGTCGCCGCCCGACACCGCCGTGAGAGGATCAGCGAGAAAATCCGAATCCTGCAGAGACTCGTCCCCGGAGGAATCAAGCTCGACACCGCGTCCATGCTCGACGAAGCCATTCGCTACGTCAAATTCTTGAAGAGACAAATCAGGTTCCTCCAATCTCCACCACACCAACACTGCACGATCACCACCGGTAACAACACCTCTCTCGCCGATTGGCCTTACACACCAAACACGCCCTACACCGCTGCCACCGGAACGGTGTTCAACGCCGGTGATAGCTCCTCCGGGTTTAACCATGAGGTAATTAGTGAATGA 660 0.5121 MNTNQNTHPSFTNSSVNISNNHPTWNMNLEHMGSAWLPLQTPISTSSSSGFLISDMFGINLGREGEGEEEEEEEEELGAMKEMMYKIAALQPVEIDPSTIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGIKLDTASMLDEAIRYVKFLKRQIRFLQSPPHQHCTITTGNNTSLADWPYTPNTPYTAATGTVFNAGDSSSGFNHEVISE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2387 219 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 197 IPR045843 GO:0003700|GO:0006355
Prci4g2387 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 171 IPR036638 GO:0046983
Prci4g2387 219 SMART finulus 116 165 IPR011598 GO:0046983
Prci4g2387 219 Gene3D - 113 175 IPR036638 GO:0046983
Prci4g2387 219 Pfam Helix-loop-helix DNA-binding domain 120 159 IPR011598 GO:0046983
Prci4g2387 219 CDD bHLH_AtIND_like 111 168 - -
Prci4g2387 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2387 Prci-Chr4 36645643 36646467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2387 79 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 67.890 4.79e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g2387 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2387 - - pcin:129307933 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2387 4 36645643 36646467 Prci4g2387 4 36645643 36646467 ECH