Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2385 ATGTTTGGCGTGCGTGGTTCTGCTGGAATTGTTTCTGATGTTGTTTACCAGCTTCGTCAAACTTTATCACTTCATGGTGTGCGAGTACAAAATATAAACATCGGGGGTGGTGTTGGAGGGGAGATCCCTGACAACAAGCGCCTCCAGTATGCCCTGCAGCACATACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTCGAGAACAAATATGTCAAGGACCTTAGTAAAAGAGAGCTATATTCCCTTCGAGAATTACTTTCCAAGTACATGCTCGGCAATGACTTGAAAAGGTGTGTCGAGAAAGATATAGAAAGGTTGGTCAGTATTCAGTGCTACAGGGGTTTCAGACATGTGGATGGGTTACCCTGCAGAGGACAACGCACACATACAAATGCTCGCACCAGGAAGAGCAGGCCAGGTTTTGCTGCATCAAGATCTGCTCAATAG 465 0.4645 MFGVRGSAGIVSDVVYQLRQTLSLHGVRVQNINIGGGVGGEIPDNKRLQYALQHIHGIGRSKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYMLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2385 154 Gene3D 30s ribosomal protein s13, domain 2 103 142 IPR027437 -
Prci4g2385 154 SUPERFAMILY S13-like H2TH domain 39 143 IPR010979 GO:0003676
Prci4g2385 154 Pfam Ribosomal protein S13/S18 39 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci4g2385 154 Gene3D - 38 102 - -
Prci4g2385 154 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 24 142 - -
Prci4g2385 154 Hamap 30S ribosomal protein S13 [rpsM]. 26 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci4g2385 154 ProSitePatterns Ribosomal protein S13 signature. 119 132 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci4g2385 154 FunFam Ribosomal protein S13 103 142 - -
Prci4g2385 154 FunFam 30S ribosomal protein S13 38 103 - -
Prci4g2385 154 ProSiteProfiles Ribosomal protein S13 family profile. 38 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci4g2385 154 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2385 Prci-Chr4 36628763 36632769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2385 25 143 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.070 1.89e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2385 K02952 - gmx:100527465 235.343