Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2377 ATGGCTCCGGCCAACTCCTCGGCGGCGGCGGCTCAGAGGCTCATCGGCTTCAGCCGCCGCACACAAGCCCCGCGCCAGTCGCCGTCGCCGCCGGCCTCGCCTCCGGTCAAGAAGTATAAGTCATTGGCCGAGATAATGGCCAAGGCACGGTATGCTGTCGTTGAGAGGGATGATTACAGTGACGTGTTGTGTGATCAATGCGGCTCTGGTGAACGCCCGGACGAGCTGCTTTTGTGTGACAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGTTGTGAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTTTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAGTGCTCTTCTCCCCAAGATGCCAAGAAGCGTAAAAGGCGTACATCACTGATATTGCAAAAGAAACGAAGAAGATTATTGCCATTTATTCCTACAGAAAATCCTTGCCAGAGACTGAAACAGATGGGTTCTCTTGCTGCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCGCATGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAGATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGACAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACAGTAGAGGCAGATGGCTCAATAAAGGATATGACGTTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGACGACTGTGACAGTCTGATGACCCTTTTATTAGCAACTGATCCTTCTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGGTACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAGAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1128 0.4557 MAPANSSAAAAQRLIGFSRRTQAPRQSPSPPASPPVKKYKSLAEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKKRKRRTSLILQKKRRRLLPFIPTENPCQRLKQMGSLAAALTALHMEFSDDLTYSHEMAPRSANHADFEDGGMQVLSREDIETLEHCRAMCRRGQCPPLMVVYDSCEGYTVEADGSIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPSKSLVICPDKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISEGERLYYDYNGYEHEYPTHHFV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2377 375 CDD SET_ATXR5_6-like 238 375 - -
Prci4g2377 375 SUPERFAMILY FYVE/PHD zinc finger 28 109 IPR011011 -
Prci4g2377 375 SUPERFAMILY SET domain 229 363 IPR046341 -
Prci4g2377 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Prci4g2377 375 SMART PHD_3 63 109 IPR001965 -
Prci4g2377 375 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Prci4g2377 375 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Prci4g2377 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 123 IPR013083 -
Prci4g2377 375 MobiDBLite consensus disorder prediction 17 37 - -
Prci4g2377 375 Gene3D SET domain 147 375 IPR046341 -
Prci4g2377 375 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 136 373 - -
Prci4g2377 375 Pfam SET domain 198 363 IPR001214 GO:0005515
Prci4g2377 375 Pfam PHD-finger 64 109 IPR019787 -
Prci4g2377 375 FunFam Histone-lysine N-methyltransferase ATXR5 147 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2377 Prci-Chr4 36572784 36577443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2377 61 117 C2H2 Transcription Factor Family AT3G01460 36.207 1.11e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci4g2377 SET 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2377 K24406 - qsa:O6P43_023354 622.854