Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2376 ATGGCTCCGGCCAACTCCTCGGCGGCGGCGGCTCAGAGGCTCATCGGCTTCAGCCGCCGCACACAAGCCCCGCGCCAGTCGCCGTCGCCGCCGGCCTCGCCTCCGGTCAAGAAGTATAAGTCATTGGCCGAGATAATGGCCAAGGCACGGTATGCTGTCGTTGAGAGGGATGATTACAGTGACGTGTTGTGTGATCAATGCGGCTCTGGTGAACGCCCGGACGAGCTGCTTTTGTGTGACAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGTTGTGAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTTTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAGTGCTCTTCTCCCCAAGATGCCAAGAAGCGTAAAAGGCGTACATCACTGATATTGCAAAAGAAACGAAGAAGATTATTGCCATTTATTCCTACAGAAAATCCTTGCCAGAGACTGAAACAGATGGGTTCTCTTGCTGCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCGCATGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAGATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGACAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACAGTAGAGGCAGATGGCTCAATAAAGGATATGACGTTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGACGACTGTGACAGTCTGATGACCCTTTTATTAGCAACTGATCCTTCTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGTTGA 1008 0.4643 MAPANSSAAAAQRLIGFSRRTQAPRQSPSPPASPPVKKYKSLAEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKKRKRRTSLILQKKRRRLLPFIPTENPCQRLKQMGSLAAALTALHMEFSDDLTYSHEMAPRSANHADFEDGGMQVLSREDIETLEHCRAMCRRGQCPPLMVVYDSCEGYTVEADGSIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPSKSLVICPDKRGNIARFISGINNHTQEGRKKQNCKCVS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2376 335 Gene3D SET domain 147 335 IPR046341 -
Prci4g2376 335 MobiDBLite consensus disorder prediction 17 37 - -
Prci4g2376 335 SUPERFAMILY SET domain 229 316 IPR046341 -
Prci4g2376 335 Pfam PHD-finger 64 109 IPR019787 -
Prci4g2376 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 124 IPR013083 -
Prci4g2376 335 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 136 333 - -
Prci4g2376 335 SMART PHD_3 63 109 IPR001965 -
Prci4g2376 335 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Prci4g2376 335 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Prci4g2376 335 SUPERFAMILY FYVE/PHD zinc finger 28 109 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2376 Prci-Chr4 36572783 36579325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2376 61 117 C2H2 Transcription Factor Family AT3G01460 36.207 9.52e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci4g2376 PHD 4.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2376 K24406 - qsa:O6P43_023354 538.495