Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2370 ATGGTCAGGGACGATCTATACATCACGATACCGACCTTCTTCCGTTGTCCTATTTCCCTCGATATCATGAAATCTCCGGTGAGTCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATTCAACGCTGGCTCGATAACGGCAACAACACCTGCCCTGCCACCATGCAGGTTTTGCAAACCAAAGAGTTTGTTCCTAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCCGACTCGGTTCACAACCGAGTCGAATCGGCCGAGTCTCCGGCCACCAGAACAGTGCCCTCGCCGGATCAGGTAGTCGAAACTGTGAAGTACTTGGACGGCCACGGCGAGAACTGTCTCGATTCCTTAACAAGAATTGTATATTTCGCCGAAGAATCTGAAGAGAATCGAGAGTTCCTTGCGAAGTTAGACGGATTCGTGCCTTTGCTCGTTGATTTACTCGACAATGTCAATGGCGACGTTGAAATGCTCGAGCGAGTCATTAGTGCTTTAGATACAGTTCTAAATAAAATCGAAGATCGCGAGCAGTTGAAGAGATTGATGTTGAAAAACCGCGGTAATTGCCTAGCTTCTCTGCTCCTAGTTCTGCAACAAGGTAGCGCCGTCTCGAAAATCGGATCGGTGAGGATTCTAAAGTTCATCGCTGTGGATGCCGAGTCCAAGGTTACGATCGCCGAAAAGGAAGGTCTAATGTCCGAATTGCTTAAATCAGTCGCTCCAGACAAGGACCCAGCGCTAATTGAAAACAGTTTGTCGTGTTTGGTTGCAATCTCGACGCCTAAGCGGAACAAGTTGAAATCGATCCATCTCGGAGCTATCAAGACACTTTCGCAGTTACTTTCTGGCTCGAATTCGAGCACGTCCGTAACGGAAAAGGCTCTGAAACTGCTCGAAACGATGTCGTCGACTAAAGAAGGTAGGTCGGAGATCTGCGAGGACCCGGCGTGCTTACCGGCCGTATTGCAAAAAGTTCTGAAGGTATCAAGCATCGCGACGGAGCACGCGGTGATGATACTGTGGACTGTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTTACCAAATTTCTGCTTCTGATACAGACCAATTGCTCGCCGGCGGTTCGGCAAATGTCCGCCGATTTGCTCAAGATTTTTCGGGTCAACTCTAAATCATGCCTTTCTTGCTACGATACTAAGACCACCCATATCATGCCCTTCTGA 1236 0.4919 MVRDDLYITIPTFFRCPISLDIMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSVHNRVESAESPATRTVPSPDQVVETVKYLDGHGENCLDSLTRIVYFAEESEENREFLAKLDGFVPLLVDLLDNVNGDVEMLERVISALDTVLNKIEDREQLKRLMLKNRGNCLASLLLVLQQGSAVSKIGSVRILKFIAVDAESKVTIAEKEGLMSELLKSVAPDKDPALIENSLSCLVAISTPKRNKLKSIHLGAIKTLSQLLSGSNSSTSVTEKALKLLETMSSTKEGRSEICEDPACLPAVLQKVLKVSSIATEHAVMILWTVCYLFRDQKAQEVVAMANGFTKFLLLIQTNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2370 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 98 IPR013083 -
Prci4g2370 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Prci4g2370 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Prci4g2370 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 318 IPR000225 GO:0005515
Prci4g2370 411 SUPERFAMILY ARM repeat 68 393 IPR016024 -
Prci4g2370 411 Gene3D - 101 216 IPR011989 -
Prci4g2370 411 Gene3D - 217 394 IPR011989 -
Prci4g2370 411 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Prci4g2370 411 SUPERFAMILY RING/U-box 5 78 - -
Prci4g2370 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Prci4g2370 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Prci4g2370 411 Coils Coil 157 177 - -
Prci4g2370 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2370 Prci-Chr4 36516752 36518344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2370 1 411 U-box Gene Family AT5G64660 55.425 4.54e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2370 - - qsa:O6P43_023349 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2370 4 36516752 36518344 Prci4g2370 4 36516752 36518344 ECH