Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2343 ATGGACTTTGACGAGTATGATTACTTGGAGAAGACAGTGGAGGAGCAGGGAGATCAAGATTTGACGAAGAGCAAGGAGAAAAACGACAAGAGTGAGAGGGCTTACCGGAAGCGTGACGTCGATGATGATGTCGACGGCGAAGACAAGAAGAGCAAGAGGTCCAGGGGCGATGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGAGAGAGAACGGTCTAGTCGAGAAAAGGAGCGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGCGATAGGGAGCGAGAAAGGAGGACCAGCAGGGAAAGAGATAGGGAGAAAGACAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAAGAGAGAGAGAAGGAGAAAAGAGAGAAAGATAGGGAGAGGGAAAAGGAACGGGAGAGAAGGGAGAGAGATAGGGAGAGGGAAAGGGAGAAAGAGAGGGAGGAGAGAGAGAGGTCCAGGCGAAGCAGAAGTCGTTCTGAACGAGATAGAGAAAGAGAACGGGAATTGGAGACTAGAGATAGCCGGAGGTTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGCAAGGTGAGGGATGTTCGTTTGATCATGGATAGGAATTCAAGGCGGTCTAAAGGAGTTGGGTACATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCCCTGTCCGGCCAACTGCTTCTGGGACAACCTGTGATGGTCAAACCTTCAGAGGCTGAAAAGAACCTGGTTCAGTCTAATACTACCAGTGGAGGTGCAGGGGTAGCAGGACCATATGGAGCAGTGGACAGGAAACTTTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGGGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTACCCCTTGACATGGAGACCGGACACTGCAAGGGTTTTGGCTTTGTGCAATTTGCTAATCTCGAACATGCCAAGGCAGCTCAGAGTTTGAATGGGAAATTAGAGATTGCTGGTAGGACTATCAAGGTTTCATCGGTTACAGATCATGTTGGAGGCCAAGATACAACTGCAAAATCTGCTGATTTGGATGATGATGAAGGTGGATTGTCTTTGAATGCTCAATCTAGAGCGATGCTTATGGCAAAGTTGGACCGCTCTGGTATTGCCACAAGCATTGCAGGGTCTATTGGTGGAGTGCCTCTTGTGAATGGCTCAGCCCCTGCCCAGCAGGCTATTAGTTTGCCAGCTGGGGGTCCAGGTATGGTACCTGCGTCAGCTCTCCCAACAGCCATTATGCCTGCCCCAGGAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACCAGTGAGACGGAACCAGATTTTGACGAGGATATTAAAGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAAAAATAGTGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCTAGTGGTGCTCAACAGGCAATGCACATGAGATGGTTTGCCCGCAGGTTGATTTCAGCGGTGTTCATGCAACCTCAGGTATATGAAGCGAAGTTTAAAGGAGAAGCTTGA 1719 0.4852 MDFDEYDYLEKTVEEQGDQDLTKSKEKNDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDRERERSSREKERHRSSRDRERDGDRERERRTSRERDREKDRDKERERERRDKEREKEKREKDREREKERERRERDREREREKEREERERSRRSRSRSERDRERERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGGAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSIGGVPLVNGSAPAQQAISLPAGGPGMVPASALPTAIMPAPGAEPVGTPSECLLLKNMFDPTSETEPDFDEDIKEDVAEECSKFGRVKHIYVDKNSAGFVYLRFETVQAASGAQQAMHMRWFARRLISAVFMQPQVYEAKFKGEA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2343 572 CDD RRM1_RBM39_like 202 274 - -
Prci4g2343 572 FunFam Splicing factor CC1-like 127 286 - -
Prci4g2343 572 FunFam Splicing factor CC1-like 287 392 - -
Prci4g2343 572 NCBIfam splicing factor, CC1-like family 87 568 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci4g2343 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 278 IPR000504 GO:0003723
Prci4g2343 572 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 568 IPR006509 GO:0003723|GO:0005634|GO:0006397
Prci4g2343 572 CDD RRM2_RBM23_RBM39 305 382 - -
Prci4g2343 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 270 IPR000504 GO:0003723
Prci4g2343 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 375 IPR000504 GO:0003723
Prci4g2343 572 Coils Coil 111 168 - -
Prci4g2343 572 Gene3D - 194 287 IPR012677 -
Prci4g2343 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Prci4g2343 572 FunFam Splicing factor, CC1-like protein 473 572 - -
Prci4g2343 572 Gene3D - 299 394 IPR012677 -
Prci4g2343 572 MobiDBLite consensus disorder prediction 10 200 - -
Prci4g2343 572 CDD RRM3_RBM39_like 477 559 - -
Prci4g2343 572 ProSitePatterns Rrf2-type HTH domain signature. 416 434 IPR030489 -
Prci4g2343 572 SMART rrm1_1 202 274 IPR000504 GO:0003723
Prci4g2343 572 SMART rrm1_1 304 377 IPR000504 GO:0003723
Prci4g2343 572 SMART rrm1_1 479 556 IPR000504 GO:0003723
Prci4g2343 572 SUPERFAMILY RNA-binding domain, RBD 303 561 IPR035979 GO:0003676
Prci4g2343 572 Gene3D - 473 571 IPR012677 -
Prci4g2343 572 SUPERFAMILY RNA-binding domain, RBD 194 293 IPR035979 GO:0003676
Prci4g2343 572 MobiDBLite consensus disorder prediction 1 200 - -
Prci4g2343 572 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 396 496 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2343 Prci-Chr4 36260462 36267070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2343 275 376 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.13e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2343 K13091 - qsa:O6P43_030384 668.692