LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g2341	ATGTGTTTCTTAAAGGTGGCGAATCCTAGTACGCACACCTCCAACAACGTTGTTCATGTTCCTTCTTCGTCGCTGCCGATTGTATTCCCAGGTATGGATAGGGACAGAGAGATGTCTGCTATGGTTTCTGCTCTCAGCCACGTCGTCGCCGGAGATATTCCCGGTGATTCCAGTGAAATTTCTTCAGGAGGCGGCGGCGGCGGCGGCGGCCGAGGTGGAGGGGACTCTGTTACATTAAACTCACTGTCAGATTCAACGATGCCGTCTTCGTGTCCTTCGTCTTACGGTGGTAACTCTGCTTTGAAGCGAAACAGGGAAGATTATATTAGAGGCTCTTCCACTGCAATTATTCCAACAGTTGCAGCAGAAGGTTCAAGAGGAGAGAGAATGGAAATGGAAAATGCAGTGTATGAATATAGCTGTAATGTAGAGACTGTGGGAAGATCAGGGGAAGGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCGGCTGAGATAAGAGATCCTTTCAAAGCTGCCCGAGTTTGGTTGGGCACTTTTGACACGGCGGAGGCTGCTGCCCGGGCCTACGATGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAGCTTAATTTCCCTGAGAATGTCAGGCTCCGGCAACCGCCTCCGACGACGGCGACGACCCATTTGAGAGGTTCGGGTTCTGCAAGTACCCTTTTGTCCACACCGACGTCCACCGAGCCGATTGTTCATACTGAAGCTCTTCATCACCACCGTCTTATGAGTTCTGAACCGGCGGCGGCGGCGGTTGATTTTTATAACTATTCGCAGTTTTCGGAGTTTCCCATGAATTTTTATGATCAGATGGTTATGACATCTTCAATGGCCCATCATTCTCAGTCATCCTCATTGCCGTCCTCATCTTCATCTTCTACATTGGCATCTTCTGTTACCTCTCAGCAGGGCCAAGCAGGTTTGCCTTATCCGGGTTGGGTCATGCCGGAAACGGGTCAGGAAAGTGGATCCGAATGCTTACAATCAGCATGGTCAGCTTCGGGTCATAGTACTTCTTCCTCTGCGTGA	1080	0.5074	MCFLKVANPSTHTSNNVVHVPSSSLPIVFPGMDRDREMSAMVSALSHVVAGDIPGDSSEISSGGGGGGGGRGGGDSVTLNSLSDSTMPSSCPSSYGGNSALKRNREDYIRGSSTAIIPTVAAEGSRGERMEMENAVYEYSCNVETVGRSGEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLRQPPPTTATTHLRGSGSASTLLSTPTSTEPIVHTEALHHHRLMSSEPAAAAVDFYNYSQFSEFPMNFYDQMVMTSSMAHHSQSSSLPSSSSSSTLASSVTSQQGQAGLPYPGWVMPETGQESGSECLQSAWSASGHSTSSSA	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	297	359	-	-
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	215	244	-	-
	Prci4g2341	359	PANTHER	DNA-BINDING DOMAIN	144	314	IPR044808	GO:0003700\|GO:0009873
	Prci4g2341	359	ProSiteProfiles	AP2/ERF domain profile.	155	212	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	297	324	-	-
	Prci4g2341	359	Gene3D	AP2/ERF domain	154	214	IPR036955	GO:0003700\|GO:0006355
	Prci4g2341	359	FunFam	Ethylene-responsive transcription factor 2	154	213	-	-
	Prci4g2341	359	PRINTS	Ethylene responsive element binding protein signature	178	194	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	PRINTS	Ethylene responsive element binding protein signature	156	167	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	217	244	-	-
	Prci4g2341	359	CDD	AP2	155	214	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	76	98	-	-
	Prci4g2341	359	Pfam	AP2 domain	155	204	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	SMART	rav1_2	155	218	IPR001471	GO:0003700\|GO:0006355
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	52	98	-	-
	Prci4g2341	359	SUPERFAMILY	DNA-binding domain	155	213	IPR016177	GO:0003677
	Prci4g2341	359	MobiDBLite	consensus disorder prediction	338	359	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g2341	Prci-Chr4	36210837	36213003	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g2341	163	296	AP2-EREBP Transcription Factor Family	AT5G64750	53.793	3.86e-36	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci4g2341		AP2	4.4e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci4g2341	-		-	pcin:129309833	590.497