Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2284 ATGAATTCTCCATCCACACAGTTTGTTTCCCCAAGAAGGATGGGTGTGTATGATCCAATCCAACAGATTAATATGTGGGGAGAAAGTTTCAAAAGTAATGGTAATTTAAATGCCTTAATTGGTGAAGCAGGTGGAAAGTTAATTAATCAGCCAGAGGATGCTTCTCATAACGCATTGGGTACGTCCCAGATGTATGGACAAGAAGCTAATAAGCCTATTGATAAGATACAAAGACGTCTTGCACAAAATAGAGAGGCTGCTCGTAAGAGTCGTATACGGAAGAAGGCCTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGCTGATCCAGTTAGAGCAAGAGCTCAACCATGCAAGACAACAGGGTTTATATATGGGCGGGGCATTAGATTCTGATAATCTGGGTTTTGCTGGAACTGTTAATTCAGGTATTACGACCTTTGAGATGGAGTATGGACACTGGCTTGAAAAGCAAAATAGACTAATCTGTGAACTAAGAGGTGCTTTAAATGCTCATATTAGCGACATGGAGCTCAGGATGCTTGTAGATAGCATAATGAATCACTATTTTGAACTCTATCAAAAGAAGTCTGCTGCTTCAAAAGCAGATGTTTTCTATGTGATGTTTGGTATGTGGAAAACTACAGCTGAGCGATTTTTCATGTGGATTGGAGGCTTTCGCCCCTCTAAGCTTCTAAAGGTCATTGTCCCTCTGATTGAACCCTTGACAGAGCAACAACGGTTTGATATCTCTAACCTCGAACAATCTTGCCAGCAAGCAGAAGATGCCCTTTCTCAAGGCATGGATAAACTCCAGCAAACACTTGGCGATACTATAACGGCTGGACCACTAGTTGAAGGAACTTATATTCCTCAGATGGCTGCTGCAATGGAGAAAATGGAAGCTCTTGTGAGCTTTGTAAACCAGGCTGATCATCTTCGTCAGGAAACATTGCAGCAAATGTTTCGAATCCTAACAATCCGTCAGGCGGCTCGATACCTGCTTACTCTAGGTGAATATTTCCAACGCCTACGAGCCTTGAGCTCACTTTTGGCTAATCGCCCACAGGAGCCAGCTTAG 1080 0.4259 MNSPSTQFVSPRRMGVYDPIQQINMWGESFKSNGNLNALIGEAGGKLINQPEDASHNALGTSQMYGQEANKPIDKIQRRLAQNREAARKSRIRKKAYVQQLESSRLKLIQLEQELNHARQQGLYMGGALDSDNLGFAGTVNSGITTFEMEYGHWLEKQNRLICELRGALNAHISDMELRMLVDSIMNHYFELYQKKSAASKADVFYVMFGMWKTTAERFFMWIGGFRPSKLLKVIVPLIEPLTEQQRFDISNLEQSCQQAEDALSQGMDKLQQTLGDTITAGPLVEGTYIPQMAAAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLTLGEYFQRLRALSSLLANRPQEPA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2284 359 Coils Coil 250 270 - -
Prci4g2284 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
Prci4g2284 359 FunFam BZIP family transcription factor 74 123 - -
Prci4g2284 359 Coils Coil 94 121 - -
Prci4g2284 359 SMART brlzneu 71 142 IPR004827 GO:0003700|GO:0006355
Prci4g2284 359 ProSiteProfiles DOG1 domain profile. 144 354 IPR025422 GO:0006351|GO:0043565
Prci4g2284 359 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
Prci4g2284 359 Gene3D - 74 123 - -
Prci4g2284 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 115 IPR004827 GO:0003700|GO:0006355
Prci4g2284 359 Pfam Seed dormancy control 162 236 IPR025422 GO:0006351|GO:0043565
Prci4g2284 359 Pfam bZIP transcription factor 75 104 IPR004827 GO:0003700|GO:0006355
Prci4g2284 359 SUPERFAMILY Leucine zipper domain 75 116 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2284 Prci-Chr4 35579170 35585398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2284 1 359 Calmodulin-binding Proteins AT5G65210 66.033 5.38e-179 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Prci4g2284 DOG1 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2284 K14431 - gmx:100793353 541.962