Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2268 ATGGGATTGAGAGAGCGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATCGAGCAGCTGCGACAGAGCTCATCCTCTGCACAAGAGAAGGAATACTCCTTAAGGCAGTTATCGGAGCTTATTGATGTGCGTGAAAATGCATTTAGCGCTGTTGGATCTCATTCTCAGGCAGTGCCAGTGCTTGTTTCTCTTCTCCGATCAGGTTCAGTGAGTGTGAAGATTGAGGCAGCGACTGTTTTGGGCTCCCTTTGTAAAGAAAATGAGCTAAGAGTGAAAGTGTTACTTGGAGGATGCATTCCTCCATTGCTTGGTCTACTTAAATCCAGTTCAGCTGATGGTCAAGTAGCTGCTGCGAAGACTATTTACGCTGTCTCTCAAGGTGGCTCAAAAGACCACGTTGGATCAAAAATTTTTTCAACTGAGGGAGTGGTACCTGTGCTGTGGGAGCAGCTTCAGAAAGGGCTGAAGACTGGAAATGTAGTTGATGGTTTATTGACCGGAGCCTTGAAAAATCTCTCTAGCAATACGGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACGTGTTAATGAAGTTATTGACAGCAGGTCATCCTAGCACTTTAGCTAATGTGTGCTTCCTACTTGCCAGCATGATGATTGAGGATGCGTCTGTTTGTTCTAAGGTGTTGGCTTCAGAGGCGACAAAACAGCTCCTAAAATTATTGGGCCCTGGTAATGACGCCCCTATTAGAGCTGAAGCAGCCGGTGCTCTGAAATCCTTGTCTTCTCAGTGCAAAGAAGCAAGGCGGGAGATAGCTAATTCTAATGGCATTCCTGCTCTGATCAATGCTACCATAGCTCCTTCGAAAGAGTTCATGCAGGGCGAGCATGCTCAAGCATTGCAGGAAAATGCCATGTGCGCGCTGGCTAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCGTGCACCTCAGCTACTCAAATTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATAGCAAGGCTGAAGCTACTAGAACATCAGATCCGTTGGTAGTGGAGCAAACATTGCTCAAGCAATTCAAACCTCAATCACCTTTTCTTGTGAAGGAACGAACCATTGAAGCCCTGGCTAGTTTGTATGGCAATCCCGTACTGTCAGTTAAGCTTGCAAATTCAGATGCAAAACACCTGCTTGTCGGATTAATAACGATGGCTGTCAATGAAGTGCAAGATGATCTTTTAAGATCTCTCCTTACATTGTGCAGCAATGAAGGCAGTCTGTGGCGTGCCCTTCAGGGCCGTGAAGGAGTTCAGCTGTTGATATCCCTTCTCGGGCTTTCATCAGAACAACAGCAAGAATGTGCAGTCGCTCTGCTATGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCCGGTGGTATACCTCCTTTAGTTCAAATTTTGGAGACAGGATCCACAAAAGCAAAAGAAGACTCGGCAAAAATCCTTACAAACCTGTGCAATCACAGCGAAGATATACGTGCTTGTGTGGAGAGTGCTAATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATAGCAGCAAAAACCTTAAATCACTTGATTCATAAATCTGATACTACCACAATCAGTCAGCTTACAGCCTTATTGACAAGCGATCTGCCTGAATCGAAGGTCTATGTTTTGGATGCTTTGAAGAGCATGCTGTCAGTTGCCCCTCTCGGTGACATTCAACGAGAAGGTAGTGCTGCAAGTGATGCAATTGATACAATGATAAAATTAATGAGCTCTACGAAAGAAGAAACTCAAGCTAAGTCAGCATCAGCTCTGGCAGGCATCTTTGAAATGAGGAAAGATGTGCGTGAAAGCAGTATTGCTGTTAAAACTCTTTTGTCAGCCATGAAGTTGCTTAATGTTGAATCTGAAAGTATCCAAATAGAGTCTTCAAGGTGCCTTGCAGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTTCTGTTGGTAGAGATGCATTTCTCCACCTAATTACACTAGCAAATTCTTCTGATTTGGATGTTGTAGAGTTGGCAACATGTGCTGTGGCTAATCTTATTTTAGATAGTGAGATTTCAGAGAAGGCTGTTGCTGAGGAAGTTATCATGCCGGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAGTTCATGCAGCAGCAGCAATTGCTCGCCTCATACATTCTCGACAAGTTGATTATTCTATAACTGAATGTGTGAATCGTGCTGGGACTGTGCTTGCTTTGGTTTCCTTCCTGGATTCTGCTATTAATGGATCAGTTTCTACCTCTGAGGCTATAGAAGCACTTGCTGTTCTGTCCAGGTTGGACCAGAATAGTGAACATGTTAAACCAGCATGGGCTGTATTGGCTGAATTCCCTGAAAGCATAAACCCAATAGTGCTGTCTATCGCTGAATCAACACCAATGTTTCAGGATAAAGCTATCGAGATATTATCCCAGTTATGCAGGGATCAGCCCGTTGTTCTTGGAAACAATGTTGTTTCAGCCAATGGATGCTTGAGTTCGTTGGCTAAAAGGGTAATTGGTACTAAAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTATTAGTTGTGCTGCCAAAGTAAGCCACCAGAGAGTGTTGGAGGAACTCAACCAATCAAACTTGTGTGTTGATCTTGTTCAATCTCTTGTTAATATGCTTTCTTCTGCATTGCCTTTGTCATACCAAGGTGAAGGAAACAAGGAATTCATTAGCATTTTCATACATAGAAAAGAAGACGCCAATGGTTGTAAATCCAGCACTGGCACCATTATATCTGATGCTAAGCTAGCTATATGGTTATTATCTATTCTTGCTTGTCATGATGAACAATGTAAAATTGCAATAATGGAGGCTGGAGCAATTGACATTCTCACTGAAAAAATATCAGACTGTTACTCGCAATATAGCCAGATTGATTATAAAGAAGATAGTAGCATGTGGATTTGTGCATTATTGTTGGCTGTATTATTTCAAGATAGAGATATCATCAGAGCACATGCTACCATGAAATCTGTACCAGCTATTGCCAGTTTATTGAGGTCAGAGGAATTAGATAACAGATATTTTGCGGCACAATCAATAGCTAGCCTAGTCTGTAATGGAAGTAGGGGTACACTACTGTCTGTTGCAAACTCAGGGGCTGCAAGTGGGCTAATCTCCCTACTTGGCTGTGCTGATGTTGATATACAGGACCTTCTGGACCTGTCAGAGGAGTTCTCCTTGGTTCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTCAGAGTTGATGACATTAGGGTTGGTGCCACTTCACGGAAGGCAATACCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCGTTTTTAGCTCTTGGGCTTCTAACTCAGCTCGCCAGAGATTGCCCATCCAATAAGATTGTAATGGTAGAATCTGGGGCCTTGGAGGCACTTACGAAGTATCTTTCACTGGGTCCCCAAGATGCAACCGAAGAAGCTGCTACTGATCTGTTAGGAATTCTGTTTGACTGTGCTGATATCCGGAGACATGAGGCAGCGTTTGGTGCTGTTACTCAACTTGTAGCTGTCTTACGTTTAGGGGGGAGAGGTGCGAGGTACAGTGCTGCCAAAGCCCTGGAAAACTTGTTCTCTGCTGATCAGATTAGGAATGCAGAAACATCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTGGAGAAGGAGCAGCATGCTGCAATAGCTACGCTCATTAGGCTCCTAAGTGAAAATCCATCTAGAGCGCTAGCAGTTGTTGATGTTGAAATGAATGCAGTTGATGTGCTTTGTAGGATCCTTTCATCGAATTGTTCATTGGACCTCAAAGGGGATGCTGCGGAATTATGTTGTGTCCTGTTTGGAAATACACGGATTAGGTCCTCAATGGCTGCTGCACGCTGTGTTGAACCTCTAGTTTCTCTCCTTGTAAGTGAGATTAGTGCTGCTCAGCATTCGGTTGTCCGCGCACTGGATAGGCTTGTTGATGACGAGCAATTGGCTGAACTAGTTGCTGCTCATGGTGCCATTATTCCTCTTGTTGGTCTTCTCTATGGCAGGAACTTTTTGCTCCATGAGGCTATTTCTAGAACTCTGGTTAAACTAGGGAAAGACAGACCTGCTTGTAAAATGGAAATGGTCAAAGCTGGAGTTATTGAAAGCATACTTGACATTCTTCATGAAGCACCTGATTATCTATGCGCTGCATTTGCTGAATTGCTGCGTATATTGACTAACAATGCTAGCATAGCTAAAGGGCAGTCTGCTTCTAAAGTGGTTGAACCCCTATTTTTGTTGCTGACAAGACATGAATTTGGGCCTGACGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACTATGTCGTGCTGATTATACGTTGACATCTCACCAAGCTATTGAACCACTTATCCCCTTGCTTGATTCTCCGATACCGGCAGTGCAGCAGTTGGCTGCTGAGCTTCTCTCACATCTACTTTTGGAAGAACACCTTCAGAAAGATCCAGCTACACAGCTGGTAATTGGTCCTCTTATTCGAGTTCTTGGCTCTGGTATCCACATATTGCAGCAGAGAGCTGTGAAAGCCCTAGTTAGTCTTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAACTTTCGAAAGTAATATTGCATGCTGACCCTTCACTTCCGCATGCTTTATGGGAATCTGCTGCTTCTGTTTTGTCAAGTATTCTGCAGTTCAGTTCTGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGATTGCTTCGTGCTGGTTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTTCTAGTGTTGGAAAGTGATGATGGCACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCGATAGAGGCTCTCTTAGAGCTTCTAAGGTCTCATCAGTGTGAGGAAACTGCTGCTAGACTACTGGAAGTATTGCTAAACAATGTCAAGATTAGAGAAACAAAAGCTACCAGATCAGCCATTGTGCCGTTATCGCAGTACCTCTTGGACCCACAAACCCAAGGACAGCAGGCAAGGTTACTGGCAATTTTGGCTCTTGGTGATCTATTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCGTGTCGTGCTTTGGTGAATGTGCTTGAAGATCAGCCAACAGAGGAAATGAAAGTTGTTGCTATATGTGCTCTGCAGAACCTTGTGATGCATAGTCGATCAAATAAAAGAGCAGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCTAGTGATCCAGAAACATCAGTTCAGGCTGCAATGTTCGTTAAACTTCTCTTCTCTAATAACACAATTCAAGAATATGCTTCAAGTGAAACGGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAAGTGTGAATGATGAGTATCTGAGAGCCTTAAATGCTCTTTTTAGCAACTTCCCACGACTGAGAGCCAGTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCATTGAAAACAGGTTCTGAGGCCACTCAAGAAGCTGCCTTGGACACACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGTCCGGCAGAAGTCTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTGCTACAGTATTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGGCTGAATTTCTACTGCAGTGTTTGCCTGGGACATTAGTTGTGATTATAAAACGCGGTAACTACATGAAGCAGTCAGTTGGTAATCCAAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCTCCAAGGCAAACCACGGTGGTCTCAACTGGCCCAAATCCGGAATGGGATGAGAGCTTTTCATGGTCCTTTGAGAGCCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAAATTGATCGCGTCGTGATGCTCGGATCTGTTGCCGGCGAGTACACTCTACTACCAGAAAGTAAAAGCGGTCCCTCGAGGAATTTAGAGATAGAATTCCAGTGGTCTAACAAGTGA 6321 0.4406 MGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLRQLSELIDVRENAFSAVGSHSQAVPVLVSLLRSGSVSVKIEAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSADGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDGLLTGALKNLSSNTEGFWNATIQAGGVDVLMKLLTAGHPSTLANVCFLLASMMIEDASVCSKVLASEATKQLLKLLGPGNDAPIRAEAAGALKSLSSQCKEARREIANSNGIPALINATIAPSKEFMQGEHAQALQENAMCALANISGGLSYVISSLGQSLESCTSATQIADTLGALASALMIYDSKAEATRTSDPLVVEQTLLKQFKPQSPFLVKERTIEALASLYGNPVLSVKLANSDAKHLLVGLITMAVNEVQDDLLRSLLTLCSNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDIRACVESANAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALKSMLSVAPLGDIQREGSAASDAIDTMIKLMSSTKEETQAKSASALAGIFEMRKDVRESSIAVKTLLSAMKLLNVESESIQIESSRCLAAIFLSIKENRDVASVGRDAFLHLITLANSSDLDVVELATCAVANLILDSEISEKAVAEEVIMPATRVLREGTISGKVHAAAAIARLIHSRQVDYSITECVNRAGTVLALVSFLDSAINGSVSTSEAIEALAVLSRLDQNSEHVKPAWAVLAEFPESINPIVLSIAESTPMFQDKAIEILSQLCRDQPVVLGNNVVSANGCLSSLAKRVIGTKNVKVKIGGAALISCAAKVSHQRVLEELNQSNLCVDLVQSLVNMLSSALPLSYQGEGNKEFISIFIHRKEDANGCKSSTGTIISDAKLAIWLLSILACHDEQCKIAIMEAGAIDILTEKISDCYSQYSQIDYKEDSSMWICALLLAVLFQDRDIIRAHATMKSVPAIASLLRSEELDNRYFAAQSIASLVCNGSRGTLLSVANSGAASGLISLLGCADVDIQDLLDLSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFDCADIRRHEAAFGAVTQLVAVLRLGGRGARYSAAKALENLFSADQIRNAETSRQAVQPLVEILNTGLEKEQHAAIATLIRLLSENPSRALAVVDVEMNAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSMAAARCVEPLVSLLVSEISAAQHSVVRALDRLVDDEQLAELVAAHGAIIPLVGLLYGRNFLLHEAISRTLVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGQSASKVVEPLFLLLTRHEFGPDGQHSALQVLVNILEHPLCRADYTLTSHQAIEPLIPLLDSPIPAVQQLAAELLSHLLLEEHLQKDPATQLVIGPLIRVLGSGIHILQQRAVKALVSLALIWPNEIAKEGGVVELSKVILHADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRAGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKATRSAIVPLSQYLLDPQTQGQQARLLAILALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWATGSVNDEYLRALNALFSNFPRLRASEPATLSIPHLVTSLKTGSEATQEAALDTLFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNYMKQSVGNPSVYCKLTLGNTPPRQTTVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGSVAGEYTLLPESKSGPSRNLEIEFQWSNK 2106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2268 2106 SUPERFAMILY ARM repeat 22 475 IPR016024 -
Prci4g2268 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 482 522 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1394 1434 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 93 133 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1812 1852 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 690 728 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1353 1393 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 774 816 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 268 317 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1685 1724 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1139 1182 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1520 1562 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 225 266 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1266 1308 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 51 92 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1436 1476 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 524 564 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 182 223 IPR000225 GO:0005515
Prci4g2268 2106 SMART arm_5 1184 1225 IPR000225 GO:0005515
Prci4g2268 2106 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1985 2106 - -
Prci4g2268 2106 SUPERFAMILY ARM repeat 979 1338 IPR016024 -
Prci4g2268 2106 Coils Coil 254 281 - -
Prci4g2268 2106 SUPERFAMILY ARM repeat 1576 1983 IPR016024 -
Prci4g2268 2106 Gene3D - 776 1124 IPR011989 -
Prci4g2268 2106 SUPERFAMILY ARM repeat 1276 1609 IPR016024 -
Prci4g2268 2106 ProSiteProfiles C2 domain profile. 1966 2083 IPR000008 -
Prci4g2268 2106 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Prci4g2268 2106 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Prci4g2268 2106 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 3 2106 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Prci4g2268 2106 Gene3D - 1652 1754 IPR011989 -
Prci4g2268 2106 Gene3D - 361 602 IPR011989 -
Prci4g2268 2106 Gene3D - 6 360 IPR011989 -
Prci4g2268 2106 SMART C2_3c 1986 2082 IPR000008 -
Prci4g2268 2106 Gene3D - 603 775 IPR011989 -
Prci4g2268 2106 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1335 1569 - -
Prci4g2268 2106 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1985 2093 IPR035892 -
Prci4g2268 2106 Gene3D - 1132 1353 IPR011989 -
Prci4g2268 2106 Gene3D C2 domain 1985 2106 IPR035892 -
Prci4g2268 2106 Gene3D - 1755 1984 IPR011989 -
Prci4g2268 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1151 1195 IPR000225 GO:0005515
Prci4g2268 2106 CDD C2 1987 2077 - -
Prci4g2268 2106 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1780 1823 IPR000225 GO:0005515
Prci4g2268 2106 Pfam C2 domain 1986 2075 IPR000008 -
Prci4g2268 2106 Gene3D - 1357 1651 IPR011989 -
Prci4g2268 2106 SUPERFAMILY ARM repeat 465 819 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2268 Prci-Chr4 35428400 35438390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2268 445 577 U-box Gene Family AT2G23140 40.000 1.41e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2268 - - gmx:100818900 3503.38