Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2248 ATGACGCAGCAGAATATGGTGATCTCTGATGCCAAGTCCAGACTCAACTTGACCTTCACCGCCGCCGTCTCAAACTCGTTCAATTTCACCACCGCTCCTCACAAGCCCCCCGCCCCTCCCGGAGCCGGCGCCAGCGGCTTCATCTCCATTTCAAGGAACAAGTTCTTGAAGACCCTCGACATCAATGGAGCCGCCAAAGTCAACTCCTGGGTTGACTCCATGCGAGCCTCTTCCCCAACCCACCACTCCAATAATCATCTCACCGCCCCTGCTTTCGACCCAGAAGAAAATTCTTGGATCCAGCTTCGTCACCCATCTGCATTAGATATGTTTGAGCAAATCATCGATGCTTCCAGAGGAAAGCAAATAGTCGTGTTTCTCGACTACGACGGTACGCTCTCGCCCATCATCGAAGACCCTGATCGTGCTTTCATGTCCGATGCGATGAGGAAGACGGTGAGAAACCTTGCGAGGTGCTTTCCGACAGCTATAGTCAGCGGCAGATGCAGAGACAAGGTGTACAACTTTGTCCGTTTGGCAGAGTTGTATTATGCTGGAAGTCATGGGATGGATATCAAAGGCCCGACTAAAATCTCTAAATACAATAGAGACAGCAAAGCGATCCTGTTTCAGCCTGCCTGTGAATTTTTACCCATGATAAACAAGGTTTATCAACTGTTGCTTGAGAAAACAAGCTCAATTGCAGGAGCTAAGGTGGAGAACAACAAGTTCTGTGTATCTGTTCATTTTCGATGTGTTGAAGAAAAGAAATGGAGCCAACTGGCAAACCAAGTCAGATCAGTGTTAAAGGAGTACCCCAAGCTTCGCCTCACTCAAGGAAGGAAGGTACTAGAGATTCGTCCCCCGATTAAATGGGACAAAGGAGAGGCCTTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTACCGACGTGTTCCCTGTTTACATTGGAGACGATCGATCCGATGAAGATGCATTCAAGAAACTTAGAGCGAGAGGACAAGGCTATGGCATTCTTGTCTCCAAATTTCCTAAAGATACTAGTGCATCTTTCTCCTTACAAGAACCCGACGAGGTGATGGAATTTCTTCAGCGATTAGTGGAGTGGAAAAGAGTTTGTCTAGGAGCACGTTCGAGGGTGTAA 1149 0.4769 MTQQNMVISDAKSRLNLTFTAAVSNSFNFTTAPHKPPAPPGAGASGFISISRNKFLKTLDINGAAKVNSWVDSMRASSPTHHSNNHLTAPAFDPEENSWIQLRHPSALDMFEQIIDASRGKQIVVFLDYDGTLSPIIEDPDRAFMSDAMRKTVRNLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTKISKYNRDSKAILFQPACEFLPMINKVYQLLLEKTSSIAGAKVENNKFCVSVHFRCVEEKKWSQLANQVRSVLKEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCTDVFPVYIGDDRSDEDAFKKLRARGQGYGILVSKFPKDTSASFSLQEPDEVMEFLQRLVEWKRVCLGARSRV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2248 382 FunFam Trehalose 6-phosphate phosphatase 123 208 - -
Prci4g2248 382 Pfam Trehalose-phosphatase 126 358 IPR003337 GO:0003824|GO:0005992
Prci4g2248 382 NCBIfam trehalose-phosphatase 121 369 IPR003337 GO:0003824|GO:0005992
Prci4g2248 382 CDD HAD_TPP 124 363 - -
Prci4g2248 382 FunFam Trehalose 6-phosphate phosphatase 213 289 - -
Prci4g2248 382 NCBIfam HAD-IIB family hydrolase 125 332 IPR006379 -
Prci4g2248 382 Gene3D - 123 207 IPR023214 -
Prci4g2248 382 Gene3D - 224 376 IPR023214 -
Prci4g2248 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 44 374 IPR044651 GO:0004805|GO:0005992
Prci4g2248 382 FunFam Trehalose 6-phosphate phosphatase 219 377 - -
Prci4g2248 382 SUPERFAMILY HAD-like 124 372 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2248 Prci-Chr4 35073940 35076904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2248 112 368 Trehalose Biosynthesis Gene Families AT1G70290 26.259 1.03e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2248 K01087 - gmx:100815357 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2248 4 35073940 35076904 Prci4g2248 4 35073940 35076904 ECH