Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2222 ATGGGAAGATCTCCGTTCAGTGATGAGACTGGTTTGAAGAAAGGACCTTGGACTCCTGAAGAAGATCACAAGCTTGTTCACTACATTCAGAAACACGGCCATGGAAGCTGGAGGTCTCTCCCTAAACTTGCAGGGCTCAACAGATGTGGGAAGAGTTGCAGGTTAAGATGGACTAACTACTTGAGACCAGACATAAGGAGAGGGAAATTTTCCAAAGAGGAAGAACAGACAATTCTGGAACTTCATGCTATCCTGGGCAACAAATGGTCAGCGATTGCGAGGCACTTGCCAGGTCGGACTGATAACGAAATAAAGAACTTCTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGCTACGATCCCATGACTCACCAACCTCGAACTGATATCTTCTCTAGCCTCTCTCATCTTCTGGCTCTGGCAAATCTTAAGCAACTTCTTGACCATAATGCTTCGAGCCTTCAATTTCTGCAACATAGTATTCAACCTCAAGCAATTACAGATCGCACCAGTACCACTCATCAAGCAAACCCGAACGTTATGATGAACATGGACAGTTTCAACCATTTGAGTTCTCTAATTCAGTTAGACGACAACAACGTCGTCAATGAATCCTCTATAGCTTTTTCTCACGTGCCTGAGTTACTTACTCATTCATCATCTTCTTCTTCTACCTATCAAATACCTCCATTACTTAGTAAAGAAGACATGGTTCAAATCCCAGAATATTGTACAGTGAACAAGGAAGAGAGTGGTTCTCCCAATTCTTCTACGTGGCTTCACTGTGTTCAGGCTGAGACGACTATGGCGCCGGCGGCCACACATGCTATCATCAGTACTTCGGTGACTGATAATAGTATCGCCGATGCGGCTTGCGATTTTGGTGATGTTGTGGGTCAATACACTTGGCCTGAGTCTGAGCTGTTTCTAGAAGACTCTTTATTCCAAGAGATTAATGCTTAG 969 0.4407 MGRSPFSDETGLKKGPWTPEEDHKLVHYIQKHGHGSWRSLPKLAGLNRCGKSCRLRWTNYLRPDIRRGKFSKEEEQTILELHAILGNKWSAIARHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLSHLLALANLKQLLDHNASSLQFLQHSIQPQAITDRTSTTHQANPNVMMNMDSFNHLSSLIQLDDNNVVNESSIAFSHVPELLTHSSSSSSTYQIPPLLSKEDMVQIPEYCTVNKEESGSPNSSTWLHCVQAETTMAPAATHAIISTSVTDNSIADAACDFGDVVGQYTWPESELFLEDSLFQEINA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2222 322 FunFam Transcription factor MYB39 69 130 - -
Prci4g2222 322 CDD SANT 69 112 IPR001005 -
Prci4g2222 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Prci4g2222 322 CDD SANT 16 61 IPR001005 -
Prci4g2222 322 SMART sant 66 114 IPR001005 -
Prci4g2222 322 SMART sant 13 63 IPR001005 -
Prci4g2222 322 Gene3D - 11 67 - -
Prci4g2222 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci4g2222 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci4g2222 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci4g2222 322 Gene3D - 69 116 - -
Prci4g2222 322 FunFam MYB-related transcription factor 13 66 - -
Prci4g2222 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci4g2222 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci4g2222 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Prci4g2222 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2222 Prci-Chr4 34818192 34819772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2222 1 211 MYB Transcription Factor Family AT5G10280 58.515 1.94e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g2222 Myb_DNA-binding 9.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2222 K09422 - csin:114272397 320.087