Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2220 ATGCAAAATTCCAGCTCGGTTTCTCCGGCGCCGCCCACATGTGCCGAGACCACTGTGACTCCAATCAATCGTGCTCTGGATTCGAATATGATCGCGGATCCAAGGGTTGCTCTTCAGAACCTCTCGACGGTTCGAATGAGAATGGGTTCTCTACAAAGCTTTCTATCTGAATCTATCACCACCAAAGCTTTAGTCAGCGAGGACCAGATGGACATGGTGTCTAACGAGATCGTCTCTGCCGTTCACCAGATTATCGTCAACGGCGCCGCCCTTGTCTCCTACTCCCAGAATTTGACGGCCGCCGGCGCGCCGCCATCAACGGCCTCAGGAGACTTACCAGAGCCACCAGATACGGTATATTCGATGAGGCAAGGGTTGAATTATTCTGGTACTGAGAAAGGCAATTTGAAAATTGAGGTCATGGACGATGAAGAAGCGAAGGATGGTGACGAAAATTGTGTGATCGTGGAGCTCGACGCCGTTGAATTGCTGGCGGAGCACGTTCATTTCTGTGAAATCTGCGGGAAAGGATTCAGGCGTGACGCGAATTTGCGAATGCATATGCGTGCCCATGGAAACCAATTCAAAACCCCCGAAGCGTTGGCGAAGAAACCCTCTGATAAATTGGACGTCGCTCGTGGTGGTAAAACGGTGCGATTCTCTTGCCCATTCGAAGGTTGCAATCGGAACAAGCTGCACAAGAAATTCCGGCCTCTGAAATCGGTCATTTGCGTGAAGAACCACTTCAAAAGAAGCCATTGTCCGAAAACGTATTCCTGCAATCGGTGCCACAAGAAGAATTTCTCGGTGCTTTCGGATCTGAAGAGCCATTTGAAGCATTGTGGGGAGGCAAAGTGGAAGTGTTCCTGTGGGACCACCTTTACAAGGAAAGACAAATTGTTCGGCCACATAGCTCTGTTTGATGGGCATATGCCAGCTCTTGCAGGGGATGAAGAAGAGAAAGGGAATCAAATTGTTGATATGAATATAATGTTACAGGAAGAAGAACAAGAAACAGGGCTAAATTATTTGGATGAGCAATTACCAGAAGGATTTTTTGACGACTTAGATGAATTTGGCCCGATGATTCTCTAA 1095 0.4804 MQNSSSVSPAPPTCAETTVTPINRALDSNMIADPRVALQNLSTVRMRMGSLQSFLSESITTKALVSEDQMDMVSNEIVSAVHQIIVNGAALVSYSQNLTAAGAPPSTASGDLPEPPDTVYSMRQGLNYSGTEKGNLKIEVMDDEEAKDGDENCVIVELDAVELLAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKPSDKLDVARGGKTVRFSCPFEGCNRNKLHKKFRPLKSVICVKNHFKRSHCPKTYSCNRCHKKNFSVLSDLKSHLKHCGEAKWKCSCGTTFTRKDKLFGHIALFDGHMPALAGDEEEKGNQIVDMNIMLQEEEQETGLNYLDEQLPEGFFDDLDEFGPMIL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2220 364 SMART c2h2final6 169 191 IPR013087 -
Prci4g2220 364 SMART c2h2final6 220 253 IPR013087 -
Prci4g2220 364 SMART c2h2final6 286 310 IPR013087 -
Prci4g2220 364 SMART c2h2final6 258 280 IPR013087 -
Prci4g2220 364 FunFam Zinc finger 45-like 166 192 - -
Prci4g2220 364 Gene3D Classic Zinc Finger 168 191 - -
Prci4g2220 364 Gene3D Classic Zinc Finger 245 313 - -
Prci4g2220 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Prci4g2220 364 SUPERFAMILY beta-beta-alpha zinc fingers 166 192 IPR036236 -
Prci4g2220 364 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Prci4g2220 364 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 329 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2220 Prci-Chr4 34776315 34780902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2220 141 318 C2H2 Transcription Factor Family AT1G34370 58.470 4.99e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci4g2220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2220 - - qsa:O6P43_023190 436.032