Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2191 ATGAAGAGATCACTTGAAAGCTCCGATTCTTTGGGTGCTTTGATGACTATGTGTCCATCCACAGACGAACACAGTCCGAGAAACAACAACAATAATCATGTGTATGGTAGAGAGTTCCAACCCATGATGCTGGATGGACTGGACGAGGAAGGGTGTGTGGAAGAATCAACCCATCTGATGATGTCGGAGAAGAAACGGCGTCTGAGCGTGGATCAAGTTAAGGCTTTAGAGAAGAACTTCGAGGTAGAGAACAAGCTTGAGCCTGAGAGGAAGGTGAAGCTTGCTCAAGAACTTGGGTTACAGCCTCGACAAGTGGCGGTCTGGTTCCAAAACCGTCGTGCTCGGTGGAAGACGAAGCAATTGGAGAGAGATTATGGCGTTCTCAAAGCCAATTATGAAGACCTCAGACGTAACTTTGACACCCTCCAACAGGACAATGAAGCATTGCTCAAAGAGATTAAGGAATTGAAATCTAGACTAAAAGAAGAGTACACGGAGAGGGATATTTCAGTGAAGGAAGAGACAAAGGGATCAGATTCCGACGAGAAAAAGGTCGAACAGAGTAACCCACCACCGGCGGAAACCTCCATTCTTGAATCAGAGTGCAAGGACTTGAATTATGGGTGCTTCAATGGAGTGGGAGGTGCTTCACTCATATCACCGGTGGATCATTTCAAAGACGGTTCTTCCGACAGCGACTCTAGCGCAATCCTGAACGAAGACAACAGCCCCAACGCCGCCATTTCGTCGTCGGCAGCTCTTCAGGGCAACCACCTGTTAATGTCTCCGTCGTCGCCGTCGTCCATGAACTGCTTTCAGTTCCAGAAAACTTACCAGAGTCAGTATGTGAAGATAGAAGAACACAACTTCTTAAGCGCAGAAGAAGCCTGCAATTTCTTCTCCGAAGAACAAGCACCCACCCTCCCGTGGTACTGTTCAGATCACTGGAGCTAA 954 0.478 MKRSLESSDSLGALMTMCPSTDEHSPRNNNNNHVYGREFQPMMLDGLDEEGCVEESTHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEDLRRNFDTLQQDNEALLKEIKELKSRLKEEYTERDISVKEETKGSDSDEKKVEQSNPPPAETSILESECKDLNYGCFNGVGGASLISPVDHFKDGSSDSDSSAILNEDNSPNAAISSSAALQGNHLLMSPSSPSSMNCFQFQKTYQSQYVKIEEHNFLSAEEACNFFSEEQAPTLPWYCSDHWS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2191 317 Gene3D - 61 126 - -
Prci4g2191 317 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Prci4g2191 317 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Prci4g2191 317 CDD homeodomain 64 120 IPR001356 GO:0003677
Prci4g2191 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 251 IPR045224 GO:0003700
Prci4g2191 317 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Prci4g2191 317 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Prci4g2191 317 MobiDBLite consensus disorder prediction 164 196 - -
Prci4g2191 317 Coils Coil 118 166 - -
Prci4g2191 317 MobiDBLite consensus disorder prediction 1 32 - -
Prci4g2191 317 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
Prci4g2191 317 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Prci4g2191 317 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Prci4g2191 317 MobiDBLite consensus disorder prediction 9 32 - -
Prci4g2191 317 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Prci4g2191 317 MobiDBLite consensus disorder prediction 164 188 - -
Prci4g2191 317 SMART HOX_1 62 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2191 Prci-Chr4 34413842 34415947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2191 1 316 Homeobox Transcription Factor Family AT2G22430 49.408 4.49e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci4g2191 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2191 K09338 - qsa:O6P43_030496 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2191 4 34413842 34415947 Prci4g2191 4 34413842 34415947 CCT
Prci4g2191 4 34413842 34415947 Prci4g2191 4 34413842 34415947 ECH