Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2190 ATGAAGAAAGCCTATCGACCCATTCACCAGCCGGGTTTCCCGCGAAACCCGGAAGTCCATCGAAATTTTCACCCTCCCTCCTATTGCCGTCCCCGTGGGAAACCAGAATTTCGCCCCAATCAACGCCTGGACCGTCCACCGGAAAACTCTACTCATGCCCGGCGACCTAATTTCGTTGTTCAGCTCCGCGCTGGCCGTCGAGATTTCGTCAGGGCGGATGTGGAGGCCTTGATCGCAAAATGCAAGTCCAAGCCCGAAAGTTTCAGTGTTTTCCCTGGTGATCATGTTGCTGCTCGCCTTAATTTTTGCCAGTGGTGCGACGCGCTCGAGGCCTTTGTTTGCTTTTGGGAGTGTTGCTTCAATGAAGTTCACGCCTTTATGCCGGAGCTCATATCGCATGTTCTCGTACCTTCCGACATGGACGAACTGCGTGATCGACTTCGGGTCCTTTTCGCTAGTCATGTGAAGGGCTTAATGGAAGGCAAGGAAGTCAAGAGATGGCGTGAGGAAAGTCAGCGGGCCTCGAAGGAACTTTCCCAATTAACGTATTTACTCAAGAGGCCGAAATCGTTCGGCTTGTTGGATGAGCTCCAACAAAAGAAAAAAGGGCTGGATGCAGAGAAAAAGTTAATTGAAATGAGAATAAAGGAGTTTCAGTCCGCCATGGAGTGTATATTGCGGTATCTTGAGGACAGGAAAGTGAATGAGGTTGGTATCTCTGTTTTCGGAAAATTGAAGTTCGATGAAACTTCGGATTGGAAGCGTATATATAGGATGATAATGCGGGAGCGTCGCAGACTTGGGGAGGGATTACCCATTTATGCTTACCGGAGTGATATTCTACAGCAAATACATTCTCAACAGGTAATGGTCTTAGTTGGAGAGACCGGTTCTGGTAAGAGTACACAGTTGGTGCAGTTTCTTGCTGATTCAAGCATCATCGGTGCTAATGAATCCATTATATGCACTCAGCCACGAAAGATTGCTGCCAGGTCATTGGCACTGAGGGTCCAGGAAGAAAGTAATGGATGCTATGAAAACAACTCGATCAAGTTTTATCCTACATTTTCATCCTCAAATGAGTTTAATTGTGGAATAGTATTCATGACAGACAACTGTCTATTGCAGCAGTACATGAAAGATGATAATTTGTCTGGGATCTCATGCCTTATAATTGATGAGGCTCATGAAAGGAGCCTAAATACAGATCTACTGTTGGCATTGATAAAGAGTTTGCTTTGTAGGAGGGAAGAAATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTTTCTGATTACTTTTGTGGCTGTGGAATATTTCATGTTGTAGGGAGAAACTTTCCAGTTGAAGTGAGATATGTTCCTTCGGCCTATGTGGGACAGTCTGGTCCTGCCATTGTTGCATCATATGTTTCTGATGTAGTGAGAATGGCAACTGAAGTTCACAGAACAGAGAAAGAGGGAACAATTCTTGCGTTTTTGACCTCACAGATGGAGGTAGAATGGGCTTGTGAAAAGTTTGAAGCTCTCTCTGCTGTAGCTTTGCCCTTGCATGGCAAGCTTTCACCTGAGGAGCAGCTATGTGTTTTCCAGAACATTCCTGGAAAAAGAAAGGTGATATTTGCAACTAATCTTGCAGAGACATCACTTACAATTCCTGGTGTCAAGTATGTCATAGATCCTGGGTTTGTTAAAGATAGTCGATATGAACCTGGCAGTGGAATGAATGTACTTAAAGTTTGCTGGATCAGCCAAAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGGTGTTATAGACTCTACTCAGAATTTGATTATAATTCTATGGCACCAAATCAGGAACCTGAGATCCGACGAGTTCATCTTGGTGTGGCAGTGTTGAGGATACTTGCCTTGGGAGTGAAGAACGTGCAGGATTTTGATTATGTTGATGCTCCAAGTCCTAGTTCTATTGATATGGCAATTAGGAATCTAATTCAATTAGGAGCAATTAGATTGAACAATAATAATTATGAATTAACTGAAGAAGGTAGGTACTTGGTAAAGATGGGTGTTGAGCCCAGGCTTGGTAATCTTATTCTTGGCTGTTACAAGTATGGTTTGGTAAAGGAAGGTCTTACTCTTGCAGCAGTGATGGCCAATGCCAGTAGCATCTTTTGCAGAGTAGGAAATGAAGGCGATAAACAGAGATCTGATTGCCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTGTTTACTCTTCTGTCTGTGTACAAGGAATGGGAAGCTTTGCCCCAAGAGAGGAAAAACAAATGGTGTTGGGAAAACAGTATTAATGCCAAGTCCATGAGGAGATGCCAAGACACTATTAAGGATTTGGAATCTTGCCTTGAGTATGAACTTGATGTTGTTACTCCTAGTTACTGGCGTTGGGATCCTTACAACTCTTCTGATTGTGATAAGTATCTAAAGATGGCTATACTGTCCTCACTCTCTGAGAATGTAGCCATGTACTCTGGATGCCATCAACTTGGTTATAAAGTGGCATTAACTGGGCAGCTTGTTCAACTTCATCCATCTTGTTCGTTGCTGGTATTCACTGAGAAACCTAGCTGGGTTGTTTTTGGTGAGATACTGTCTGCTTCCACTCAATATTTGGTCTGTGTGAATGCTTTTGACGTTGAATCATTGTGTACCCTTGACCCTCCTCCATTGTTTGATGTATTTGAGATGGAAAGAAAGAAGTTGCAAATGAAGATGTGGGCTGGTCTTGGCTGTATTCTGCTCAAGAGATTTTGTGGGAAAGGAAATTGTAATCTGCTTGGTCTTGTGTCACGCATAAGAACAGCTTGCAAGGATGAACGTATCTTCATTGAAGTTAATGTTGACCTGAATGAAATTCAGCTATATGCCTCCCCACGTGACATGGAATTGGCCATTGCAATGGTTAATGAAGTTCTGGAATATGAGAGAAAATGGCTGCGTGCTGAATGCTTGGAGAAATGGTTGTATCGTGGGTCTGGGGTCTCATCTCCAGTAGCTCTGTTTGGATCTGGTGCTGAGATAAAGCATTTGGAAGTTGAAAACAGGTGCTTGAGTGTTGATGTATGTCATCCTAATATAAGTTCAATTAATGATAAGGAGCTTTTGATGTTTCTTGAAAAGAATTCCTCAAGTTGTATCTGTGCTGTGCACAAGTTTACGAGTGTAGCACAGGATGTTGAAGACAGAGAGAAGTGGGGCAGGATATCATTTCTCTCCCCTGATGCGGCCAAAAAGGCTGCTGATCTTGATGGAGTGGAGTTTCATGGCTTATCCTTGAAAATAGTTCATTCACAGGCAGCTAGTGGAGGGGATAGAGCATTTTCTTTCCCTGCTGTTAAAGCTAAATTATGTTGGCCTCGCAGACTTAGCAAGGGATTTGGTATTCTTAGATGTGAAATAAAGGATGTTACTTCAATCTTAATAGATTTCCGTGGCCTTGTGATAGGAGGGAGGGCTGTTCGATGTGAAGTTGGCAGAAGGAGCCTGGATAGTATTGTGATAGGTGGACTTCATAAGGAACTCTCAGAACCTGAAATTTTAGATGTACTGAGAACTGCTACCAGTAGGAGGATTGTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGAGAATCCCCCATGCAATGTCTGTGAGGAGGCGCTCTTAAAAGAAATTTCTCCCTTTATGCCTAAAAGGCACCCCCACACTTCTCCTTGCCATGTTCAGGTGTATTCACCTGAGCCAAAGGATGCCTTCATGAGAGCTTTGATCACTTTTGATGGAAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGAAAAGTTTTGCCTGGATGTCATTCTTGGCAGAAGATAATGTGCCAGCAGTTGTTTCATAGCTCCTTGATATTCCCTTTACCTGTTTATCGTGTGATTAAGGAACCACTGGATAAGTTACTTGCTAGCTTCAGCTGTAAAGAGGGTCTGAAGTGCGAGCTAGAAATGACTGCTAATGGTTCCTACCGTATCAAAATAACAGCTAATGCCACAAAGACAGTAGCAGAGGTTAGGAGACCTCTTGAAGAACTTACTCGGGGAAAAACCATTGTCCACATGAGTCTATCCCCTCCGGTTCTACAACTGCTATTGTCCAGGGATGGCATTAATCTTAAAAGCTCGGTGCAGCAAGAGACAGAAACATGCATTCTTTTTGATCGGCACAACCTGACTTTGCGGGTATTTGGCTCTCCAGAAAAGGTTGATTTGGCCCAGCAGAAGCTAATTCAGTCTTTACTCACTCTCCATGAAAGCATGCAGTTAAAAGTCCACCTCCGAGGGAGAGATTTACCTCCTGATCTGATGAAGCAAGTGGTTAAGAGTTTTGGGCCAGATCTCCATGGGCTGAAAGAGAAGATACCAGAGGCAGACTTTACTCTCAACACACGTCACCAGATAATCTATCTTCGTGGTAAAATGGAGTTGAAAACAAAAGTAGAGGAATTAATTCATGAGATTGCTAGTTCAAGTAGTCATTTGGCTGATAGGCTTGGGACTGGACTGGATTGCCCAATTTGCTTGTGTGAGGTGGAGGATGGTTTTCAGCTTGAAAACTGTGGTCATTTGTTCTGTCGGATGTGTCTAGTGGAGCAATGTGAATCTGCTATAAGAAACCAAGGTGATTTCCCGATATGCTGCACGCATGCAGGCTGTGGGGATCCCATTCTGCTTGTAGATTTGAAAGCTCTTTTATCTAACGAGAAGTTGGAGGAACTTTTTAGAGCCTCTCTGGGAGCTTTTGTGGCTTCTAGTGAGGGCAGATACAGGTTTTGCCCATCTCCTGATTGTCCCTCCATTTATCGAGTAGCTAGTCCTTCAGCGGCAGCCGGTGAGCCATTTGTTTGCGGAGCATGTTATGCAGAGACATGTACAAAGTGTCACTTGGAGTATCATCCTTACGTTTCATGTGAGAGATACAAGGGGTACAAGGAGGATCCAGACTTATCTCTCAAGGAGTGGTGCAAAGGGAAAGAACATGTCAAGGCCTGCCCTGCATGTAGCTATACAATTGAGAAGGTAGATGGCTGCAACCACATTGAGTGCAAGTGTGGGAAGCATGTCTGCTGGGTTTGCTTGGATTTCTTTGGAACTAGTGATGCTTGTTATAGCCATTTGAGAACTATACACATGGCCATCATATAA 5220 0.4385 MKKAYRPIHQPGFPRNPEVHRNFHPPSYCRPRGKPEFRPNQRLDRPPENSTHARRPNFVVQLRAGRRDFVRADVEALIAKCKSKPESFSVFPGDHVAARLNFCQWCDALEAFVCFWECCFNEVHAFMPELISHVLVPSDMDELRDRLRVLFASHVKGLMEGKEVKRWREESQRASKELSQLTYLLKRPKSFGLLDELQQKKKGLDAEKKLIEMRIKEFQSAMECILRYLEDRKVNEVGISVFGKLKFDETSDWKRIYRMIMRERRRLGEGLPIYAYRSDILQQIHSQQVMVLVGETGSGKSTQLVQFLADSSIIGANESIICTQPRKIAARSLALRVQEESNGCYENNSIKFYPTFSSSNEFNCGIVFMTDNCLLQQYMKDDNLSGISCLIIDEAHERSLNTDLLLALIKSLLCRREEMRLIIMSATADAKQLSDYFCGCGIFHVVGRNFPVEVRYVPSAYVGQSGPAIVASYVSDVVRMATEVHRTEKEGTILAFLTSQMEVEWACEKFEALSAVALPLHGKLSPEEQLCVFQNIPGKRKVIFATNLAETSLTIPGVKYVIDPGFVKDSRYEPGSGMNVLKVCWISQSSADQRAGRAGRTEPGRCYRLYSEFDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDYVDAPSPSSIDMAIRNLIQLGAIRLNNNNYELTEEGRYLVKMGVEPRLGNLILGCYKYGLVKEGLTLAAVMANASSIFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQERKNKWCWENSINAKSMRRCQDTIKDLESCLEYELDVVTPSYWRWDPYNSSDCDKYLKMAILSSLSENVAMYSGCHQLGYKVALTGQLVQLHPSCSLLVFTEKPSWVVFGEILSASTQYLVCVNAFDVESLCTLDPPPLFDVFEMERKKLQMKMWAGLGCILLKRFCGKGNCNLLGLVSRIRTACKDERIFIEVNVDLNEIQLYASPRDMELAIAMVNEVLEYERKWLRAECLEKWLYRGSGVSSPVALFGSGAEIKHLEVENRCLSVDVCHPNISSINDKELLMFLEKNSSSCICAVHKFTSVAQDVEDREKWGRISFLSPDAAKKAADLDGVEFHGLSLKIVHSQAASGGDRAFSFPAVKAKLCWPRRLSKGFGILRCEIKDVTSILIDFRGLVIGGRAVRCEVGRRSLDSIVIGGLHKELSEPEILDVLRTATSRRIVDFFLVRGDAVENPPCNVCEEALLKEISPFMPKRHPHTSPCHVQVYSPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCHSWQKIMCQQLFHSSLIFPLPVYRVIKEPLDKLLASFSCKEGLKCELEMTANGSYRIKITANATKTVAEVRRPLEELTRGKTIVHMSLSPPVLQLLLSRDGINLKSSVQQETETCILFDRHNLTLRVFGSPEKVDLAQQKLIQSLLTLHESMQLKVHLRGRDLPPDLMKQVVKSFGPDLHGLKEKIPEADFTLNTRHQIIYLRGKMELKTKVEELIHEIASSSSHLADRLGTGLDCPICLCEVEDGFQLENCGHLFCRMCLVEQCESAIRNQGDFPICCTHAGCGDPILLVDLKALLSNEKLEELFRASLGAFVASSEGRYRFCPSPDCPSIYRVASPSAAAGEPFVCGACYAETCTKCHLEYHPYVSCERYKGYKEDPDLSLKEWCKGKEHVKACPACSYTIEKVDGCNHIECKCGKHVCWVCLDFFGTSDACYSHLRTIHMAII 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2190 1739 Gene3D - 244 448 IPR027417 -
Prci4g2190 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 780 IPR027417 -
Prci4g2190 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 254 448 - -
Prci4g2190 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 449 621 - -
Prci4g2190 1739 SUPERFAMILY RING/U-box 1683 1732 - -
Prci4g2190 1739 Pfam Helicase associated domain (HA2) 663 757 IPR007502 GO:0004386
Prci4g2190 1739 Coils Coil 194 214 - -
Prci4g2190 1739 ProSiteProfiles Zinc finger RING-type profile. 1529 1571 IPR001841 -
Prci4g2190 1739 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 388 397 IPR002464 -
Prci4g2190 1739 Gene3D - 1658 1737 - -
Prci4g2190 1739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 476 642 IPR001650 -
Prci4g2190 1739 Pfam IBR domain, a half RING-finger domain 1605 1662 IPR002867 GO:0008270
Prci4g2190 1739 SMART helicmild6 504 602 IPR001650 -
Prci4g2190 1739 CDD SF2_C_RHA 450 610 - -
Prci4g2190 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1525 1605 IPR013083 -
Prci4g2190 1739 CDD DEXHc_RHA-like 288 445 - -
Prci4g2190 1739 Pfam Helicase conserved C-terminal domain 485 601 IPR001650 -
Prci4g2190 1739 PANTHER ATP-DEPENDENT RNA HELICASE 230 909 - -
Prci4g2190 1739 Gene3D - 449 622 IPR027417 -
Prci4g2190 1739 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 826 901 IPR011709 -
Prci4g2190 1739 SMART ha2_5 662 758 IPR007502 GO:0004386
Prci4g2190 1739 CDD Rcat_RBR_DEAH12-like 1686 1735 - -
Prci4g2190 1739 FunFam RBR-type E3 ubiquitin transferase 645 751 - -
Prci4g2190 1739 SMART ibrneu5 1596 1662 IPR002867 GO:0008270
Prci4g2190 1739 SMART ibrneu5 1663 1727 IPR002867 GO:0008270
Prci4g2190 1739 CDD BRcat_RBR 1613 1665 - -
Prci4g2190 1739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 446 IPR014001 -
Prci4g2190 1739 Pfam Zinc finger, C3HC4 type (RING finger) 1529 1565 IPR018957 GO:0046872
Prci4g2190 1739 SMART ultradead3 269 455 IPR014001 -
Prci4g2190 1739 ProSiteProfiles TRIAD supradomain profile. 1525 1734 IPR044066 -
Prci4g2190 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1658 1736 - -
Prci4g2190 1739 MobiDBLite consensus disorder prediction 1 56 - -
Prci4g2190 1739 SUPERFAMILY RING/U-box 1611 1666 - -
Prci4g2190 1739 MobiDBLite consensus disorder prediction 35 51 - -
Prci4g2190 1739 SUPERFAMILY RING/U-box 1527 1605 - -
Prci4g2190 1739 ProSitePatterns Zinc finger C2H2 type domain signature. 1714 1735 IPR013087 -
Prci4g2190 1739 ProSitePatterns Zinc finger RING-type signature. 1545 1554 IPR017907 -
Prci4g2190 1739 Gene3D - 646 751 - -
Prci4g2190 1739 Pfam DEAD/DEAH box helicase 278 433 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2190 Prci-Chr4 34329239 34335994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2190 1545 1717 ARIADNE family AT3G27710 31.868 4.58e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2190 K12818 - gmx:100810008 2512.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2190 4 34329239 34335994 Prci4g2190 4 34329239 34335994 ECH