Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2143 ATGAGGTTTTTGTTTAATTTATTAATTAATGAAGTTAGATCCTCACTTAAACTGAATCCTTATATAAAGGTCATCATCCTCGCTTGCATTTTCATCAGTCTGCTATTCTTGCTTCTTCTTTGCCCTGCTTTCATTTCTTCTTCCCCACTTCAAGATCCTGAGCTTGTAGTTAAACAAGTTGAAATAAGCGCCAATGCCTCGAGGAGAAATCTAGGGTTCGTTTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGAGATGTGATCCCAATTGGCATCACAATCGCCGGCGTTTGGCCGATTGTGCTATCGGCTTCGGCAGACACACTGTCGGAGGTAGGGATGGCCAAACATACGTTGTCACCGACCCGGGCGACCACCCCATGAACCCTAAACCCGGAACTTTAAGATACGGCGTCATCCAAGAAGAACCTTTATGGATCATCTTCAAAACAGACATGAACATCAGGCTCGAGATGGACCTCCTCGTTAATTCCCACAAAACAATCGACGGCCGAGGAGCCACCATCCACATTGCTGGAGGACCTTGTATCAAAATACAACGCAAGACCAACATCATCATTCATGGCTTGCATATTCATGACTGTGTACGAGGAAATTCTGGGTTTGTGAGAGTATCTCCCCGCCAGTATCGGTTTAGTTCAAGGTCGGACGGCGACGGGATCTCGATCTTCGGCGGGACCCATGTCTGGGTGGACCATTGTTACTTGTCTAGGTGCTACGATGGGTTGATTGACGTGGTTCATGGATCGACAGCGATCACCATTTCGAACAATTACATGACCCACCATGAAAAAGTTATGCTTTTGGGACACAGCGATTCGTATGAGAAGGACCGGAATATGCAGGTCACCGTCGCGTACAATCATTTCGGAGAAGGGCTTGGAGGAAGAATGCCTAGATGCAGGTACGGATACTTTCATGTGGTGAACAATGATTACAGCCATTGGAAACATTATGCAATAGGAGGGAGCTCCAATCCCACCATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAGATGATGGAGAACACAAAGAGGTGACAAAACACTTTAGGGCATCAGATAGTGAATGGAAGAGATGGAATTGGAAGTCAGAAGGAGATCTGATGCTGAATGGCGCATTCTTCAGATCATCTGGAGAAGAAGGAGCTTCTTCTGTTTACAGTAAGACTGTGAGTTTGGCCGCCAGACCTTCACAGTTTGTGAGTTCTATTACCTCAGCAGCTGGCCCTCTCGCTTGCTCACATGGTTCTTTCTGCTAA 1287 0.4631 MRFLFNLLINEVRSSLKLNPYIKVIILACIFISLLFLLLLCPAFISSSPLQDPELVVKQVEISANASRRNLGFVSCGTGNPIDDCWRCDPNWHHNRRRLADCAIGFGRHTVGGRDGQTYVVTDPGDHPMNPKPGTLRYGVIQEEPLWIIFKTDMNIRLEMDLLVNSHKTIDGRGATIHIAGGPCIKIQRKTNIIIHGLHIHDCVRGNSGFVRVSPRQYRFSSRSDGDGISIFGGTHVWVDHCYLSRCYDGLIDVVHGSTAITISNNYMTHHEKVMLLGHSDSYEKDRNMQVTVAYNHFGEGLGGRMPRCRYGYFHVVNNDYSHWKHYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFRASDSEWKRWNWKSEGDLMLNGAFFRSSGEEGASSVYSKTVSLAARPSQFVSSITSAAGPLACSHGSFC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2143 428 Gene3D - 79 421 IPR012334 -
Prci4g2143 428 Pfam Pectate lyase 164 344 IPR002022 -
Prci4g2143 428 SMART amb_all 153 350 IPR002022 -
Prci4g2143 428 SUPERFAMILY Pectin lyase-like 80 419 IPR011050 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Prci4g2143 428 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Prci4g2143 428 PANTHER PECTATE LYASE 18-RELATED 51 425 IPR045032 GO:0030570
Prci4g2143 428 FunFam Pectate lyase 79 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2143 Prci-Chr4 33722380 33725462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2143 31 428 Polysaccharide Lyase AT5G63180 67.662 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2143 K01728 - gmx:100801136 634.409