Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2142 ATGGCAACCCCATTTTCATTCACATTCCTCCTCCTACTTCTCGCTCCTTCTTTCATTCTCTCTTCCCCACTTCAAGATCCAGAATTTGTCGTCGAACAAGTGCACAAAAGCATCAATGCGTCAAGGAGAAACTTGGGTTTTCTATCCTGTGGAACAGGAAACCCCATTGATGATTGTTGGAGGTGTGATCCCAACTGGGAAAAGAACAGAAAGCGTCTCGCAGATTGCTCCATCGGATTCGGCAAGAATGCCATCGGAGGCAGAGACGGCAGATTCTACGTCGTTACCGATTCCGGCGACCACCCTGTGAATCCCAAGCCAGGTACACTTAGATACGGTGTGATACAGGATGAGCCATTGTGGATCATCTTCAAGAACAACATGGTGATCAAGCTCAAACAAGAACTTATGATGAACTCCTTCAAGACAATCGACGGACGAGGAACGAATGTTCACATCGCAGGTGGTCCTTGCATCACAATGCAGTTCGTGACCAACATTATAATCCATGGAATCAACATTCATGACTGTAAACGAGGAGGGAATGCCTACGTCAGAGATTCTCCGACACATTACGGGTGGAGAACCGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCATATCTGGGTTGATCACTGTTCTTTATGGAATTGCCAAGACGGACTTATCGACGCCATTCACGGATCCACAGCGATAACAATCTCAAACAATTACATGAGTCGCCATAACAAGGTCATGCTTCTCGGTCACAGTGACAGTTACAAACGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTCGGTGAACGGCTAGTCCAGAGAATGCCAAGATGCAGACATGGGTACTTCCATGTGGTGAACAATGATTACACTCAGTGGCAGATGTATGCTATAGGTGGTAGTGCCAATCCAACTATCAACAGCCAAGGCAATAGATTTCTCGCTCCAAATGATGGAACTTTCAAAGAGGTGATGAAGAGAGAGAATTCACCTGAGAGTGTGTGGAAGAACTGGAACTGGAGGTCTTCAGGGGATCTGATGCTAAACGGTGCGTTTTTTACGCTGTCTGGGAAAGGATCGTCTTCAAGCTATGCTCGAGCTTCGAGTTTGTCTGCAAAATCTTCATCACTGGTTAGTTCTATAACAGCAGCAGCTGGAACACTTGATTGCAGAAAAGGCTCTCGTTGCTGA 1206 0.4668 MATPFSFTFLLLLLAPSFILSSPLQDPEFVVEQVHKSINASRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKNAIGGRDGRFYVVTDSGDHPVNPKPGTLRYGVIQDEPLWIIFKNNMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITMQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCQDGLIDAIHGSTAITISNNYMSRHNKVMLLGHSDSYKRDKNMQVTIAFNHFGERLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSANPTINSQGNRFLAPNDGTFKEVMKRENSPESVWKNWNWRSSGDLMLNGAFFTLSGKGSSSSYARASSLSAKSSSLVSSITAAAGTLDCRKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2142 401 Pfam Pectate lyase 133 318 IPR002022 -
Prci4g2142 401 SMART amb_all 127 324 IPR002022 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Prci4g2142 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Prci4g2142 401 PANTHER PECTATE LYASE 18-RELATED 24 399 IPR045032 GO:0030570
Prci4g2142 401 FunFam Pectate lyase 53 394 - -
Prci4g2142 401 SUPERFAMILY Pectin lyase-like 38 395 IPR011050 -
Prci4g2142 401 Coils Coil 399 401 - -
Prci4g2142 401 Gene3D - 53 394 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2142 Prci-Chr4 33713869 33715645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2142 5 401 Polysaccharide Lyase AT5G63180 75.124 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2142 K01728 - gmx:100782388 702.975