Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2141 ATGGCAACCCCATTTTCATTCACATTCCTCCTCCTACTTCTCGCTCCTTCTTTCATTCTCTCTTCCCCACTTCAAGATCCAGAATTTGTCGTCGAACAAGTGCACAACAGAAGCATCAATGCGTCAAGGAGAAACTTGGGTTTTCTATCCTGTGGAACAGGAAACCCCATTGATGATTGTTGGAGGTGTGATCCCAACTGGGAAAAGAACAGAAAGCGTCTCGCAGATTGCTCCATCGGATTCGGCAAGAATGCCATCGGAGGCAGAGACGGCAGATTCTACGTCGTTACCGATTCCGGCGACCACCCTGTGAATCCCAAGCCAGGTACACTTAGATACGGTGTGATACAGGATGAGCCATTGTGGATCATCTTCAAGAACAACATGGTGATCAAGCTCAAACAAGAACTTATGATGAACTCCTTCAAGACAATCGACGGACGAGGAACGAATGTTCACATCGCAGGTGGTCCTTGCATCACAATGCAGTTCGTGACCAACATTATAATCCATGGAATCAACATTCATGACTGTAAACGAGGAGGGAATGCCTACGTCAGAGATTCTCCGACACATTACGGGTGGAGAACCGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCATATCTGGGTTGATCACTGTTCTTTATGGAATTGCCAAGACGGACTTATCGACGCCATTCACGGATCCACAGCGATAACAATCTCAAACAATTACATGAGTCGCCATAACAAGGTCATGCTTCTCGGTCACAGTGACAGTTACAAACGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTCGGTGAACGGCTAGTCCAGAGAATGCCAAGATGCAGACATGGGTACTTCCATGTGGTGAACAATGATTACACTCAGTGGCAGATGTATGCTATAGGTGGTAGTGCCAATCCAACTATCAACAGCCAAGGCAATAGATTTCTCGCTCCAAATGATGGAACTTTCAAAGAGGTGATGAAGAGAGAGAATTCACCTGAGAGTGTGTGGAAGAACTGGAACTGGAGGTCTTCAGGGGATCTGATGCTAAACGGTGCGTTTTTTACGCTGTCTGGGAAAGGATCGTCTTCAAGCTATGCTCGAGCTTCGAGTTTGTCTGCAAAATCTTCATCACTGGGAAGCACATGGATGAATGAATAA 1173 0.4663 MATPFSFTFLLLLLAPSFILSSPLQDPEFVVEQVHNRSINASRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKNAIGGRDGRFYVVTDSGDHPVNPKPGTLRYGVIQDEPLWIIFKNNMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITMQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCQDGLIDAIHGSTAITISNNYMSRHNKVMLLGHSDSYKRDKNMQVTIAFNHFGERLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSANPTINSQGNRFLAPNDGTFKEVMKRENSPESVWKNWNWRSSGDLMLNGAFFTLSGKGSSSSYARASSLSAKSSSLGSTWMNE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2141 390 SUPERFAMILY Pectin lyase-like 39 372 IPR011050 -
Prci4g2141 390 FunFam Pectate lyase 54 389 - -
Prci4g2141 390 SMART amb_all 128 325 IPR002022 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Prci4g2141 390 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Prci4g2141 390 Pfam Pectate lyase 134 319 IPR002022 -
Prci4g2141 390 PANTHER PECTATE LYASE 18-RELATED 23 382 IPR045032 GO:0030570
Prci4g2141 390 Gene3D - 54 389 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2141 Prci-Chr4 33713869 33716382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2141 5 365 Polysaccharide Lyase AT5G63180 77.473 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2141 K01728 - gmx:100782388 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2141 4 33713869 33716382 Prci4g2141 4 33713869 33716382 ECH
Prci4g2141 4 33713869 33716382 Prci9g1764 9 29612721 29614643 ECH