Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2135 ATGGAATTGAAGTGGCCAGATATTTTCCTGGTGGCAACATGCTCCTTAGGATTCATCACTCTTCTCAAAACTCTGACATCACTTGTGAAGTGGGTGTGGGTTATGGTGTTGAGGCCACCCAAGAACCTCAAAACCTACGGCTCATGGGCTATCGTCACCGGTTCGACCGACGGAATCGGGAAAGCCCTTTCCTTCGAACTGGCTTCCAAGGGACTCAACATCCTTCTGGTCGGTCGAAGCCATAAGAAGCTCGAAGCTACGATGAAGGAGATAAGAGATAAACATGGTGACGAAGTCGAAGTGAAGCTTGCAGTGATTGACTTTGAGAACGTTAATGGAGAAGAAATAGTGAAGAAGATGGAGGAAGCAACGGAAGGTTTAGATGACGTGGGAATTCTGATCAACAACGCCGGCATAGGAGAACCATATCCGAGGTTCTTTCATGAGAATGATCCTGAGATTATTGATGCTGTCGTGAAGGTGAATCTTGAGGGACCCACTTGGATGACAAAGGCAATACTTCCAAAGATGATGAAGAAGAAGAAAGGAGCCATTGTTAACATTGGATCAGCTTCTGCTTCTGTAGTCCCTTCCTTTCCTCTCCACACCACATATTCTGCTACAAAAGCATATGTTGCAATGTTGTCGAAATGCATCAGTTTAGAGTACAAAACGCAAGGAATTGATATCCAGTGTCAGGTACCACTGTATGTGGCAACGAAGATGACAAAGATGAAGGCGTCTCTATTGGTTCCATCTGCAGAAAAGTACAGTAAAGCAAGCTGTGGATGTATAGGGCACGAGAGAGAGTGTGAACCTAATTTGGTTCATTCTCTACAGCGACTTCTCGTTGGAGCTCTTCCTCATGCCTTCTGTGATTGGTATCTCATGCGTGCCTTTCTTGCCCTGCGCAAAGAAACCCTTTGTAAGGATTAA 936 0.453 MELKWPDIFLVATCSLGFITLLKTLTSLVKWVWVMVLRPPKNLKTYGSWAIVTGSTDGIGKALSFELASKGLNILLVGRSHKKLEATMKEIRDKHGDEVEVKLAVIDFENVNGEEIVKKMEEATEGLDDVGILINNAGIGEPYPRFFHENDPEIIDAVVKVNLEGPTWMTKAILPKMMKKKKGAIVNIGSASASVVPSFPLHTTYSATKAYVAMLSKCISLEYKTQGIDIQCQVPLYVATKMTKMKASLLVPSAEKYSKASCGCIGHERECEPNLVHSLQRLLVGALPHAFCDWYLMRAFLALRKETLCKD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2135 311 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 43 272 - -
Prci4g2135 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 139 IPR002347 -
Prci4g2135 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 191 IPR002347 -
Prci4g2135 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Prci4g2135 311 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 192 220 IPR020904 GO:0016491
Prci4g2135 311 Gene3D - 43 272 - -
Prci4g2135 311 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Prci4g2135 311 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Prci4g2135 311 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Prci4g2135 311 PRINTS Glucose/ribitol dehydrogenase family signature 177 193 IPR002347 -
Prci4g2135 311 PRINTS Glucose/ribitol dehydrogenase family signature 128 139 IPR002347 -
Prci4g2135 311 Pfam short chain dehydrogenase 49 245 IPR002347 -
Prci4g2135 311 PANTHER RH59310P 9 307 - -
Prci4g2135 311 PIRSF 11-beta-HSD1 1 310 - -
Prci4g2135 311 CDD 17beta-HSD1_like_SDR_c 47 288 - -
Prci4g2135 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 247 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2135 Prci-Chr4 33608040 33609628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2135 16 311 Lipid Metabolism Gene Families AT1G67730 48.148 3.61e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2135 K10251 - vvi:100257722 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0574 3 7148281 7152497 Prci4g2135 4 33608040 33609628 CCT
Prci4g2135 4 33608040 33609628 Prci4g2135 4 33608040 33609628 ECH