Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2122 ATGGACAGTGGTTTCTCTTCTCCACGACGCGACAATTTTCCAGCTGGTCTGCGAGTTCTCGTCGTTGATGATGACCCGACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACTACATGTGGTTTAGCTAGGGAGGCTCTGAACTTGCTTCGCGAAAGAAAAGATGGATACGACATTGTTATCAGCGATGTAAACATGCCGGACATGGATGGCTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCGGTAGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCAATTCGAATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCAAGAGAATTTGAAGGTCACGAAGGATTTGAGGGCATTCATTTAATGAGAAACGGATCAGATCAGTCTGATGAAGGGTTGTCATTTGCCCTAGAAGATATGACCTCCATGAAGAAAAGAAAAGACCTTGATAACAAGCATGATGACAAAGAATACGGAGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTTAAAGCAGTAAACCAGATTGGATTTGACAAAGTTGGCCCCAAGAGAATTCTAGATTTGATGAATGTCCCATGGCTGACGAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGGACCAAGCCATCGGATTTTCCTCTAAAAGACTCTGCAGGAAATTTTGGATTTCAGAACTCAATAAACAGGCAGCAAAATGATGTTGCAGTTAACAGCTACAAATATTCAGATGTAACGTTACAGAGTCATGCTTCTGAAACGAAGATTCACGACGGTGATCTAAAGGCTATTGTTTCAGATTCTGCATCAGAAAAAAGAAGAGCTTTGTCTAGCATCATTCCTGATGCAAAGCTGGAGTGA 1047 0.4212 MDSGFSSPRRDNFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEGIHLMRNGSDQSDEGLSFALEDMTSMKKRKDLDNKHDDKEYGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQRSSSSGTKPSDFPLKDSAGNFGFQNSINRQQNDVAVNSYKYSDVTLQSHASETKIHDGDLKAIVSDSASEKRRALSSIIPDAKLE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2122 348 SMART REC_2 17 129 IPR001789 GO:0000160
Prci4g2122 348 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Prci4g2122 348 SUPERFAMILY CheY-like 16 141 IPR011006 -
Prci4g2122 348 Gene3D - 195 258 - -
Prci4g2122 348 FunFam Two-component response regulator 195 258 - -
Prci4g2122 348 PIRSF RR_ARR_type-B 1 343 IPR017053 GO:0003677|GO:0003700|GO:0009736
Prci4g2122 348 FunFam Two-component response regulator 17 191 - -
Prci4g2122 348 MobiDBLite consensus disorder prediction 259 274 - -
Prci4g2122 348 CDD REC_typeB_ARR-like 19 133 - -
Prci4g2122 348 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Prci4g2122 348 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Prci4g2122 348 MobiDBLite consensus disorder prediction 329 348 - -
Prci4g2122 348 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Prci4g2122 348 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 285 IPR045279 GO:0009736
Prci4g2122 348 MobiDBLite consensus disorder prediction 258 278 - -
Prci4g2122 348 Gene3D - 17 182 - -
Prci4g2122 348 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2122 Prci-Chr4 33456170 33459848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2122 11 265 Response Regulator Gene Family AT2G25180 55.212 2.21e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci4g2122 Response_reg 8.7e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2122 K14491 - gmx:100797421 541.576