Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2121 ATGGACAGTGGTTTCTCTTCTCCACGACGCGACAATTTTCCAGCTGGTCTGCGAGTTCTCGTCGTTGATGATGACCCGACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACTACATGTGGTTTAGCTAGGGAGGCTCTGAACTTGCTTCGCGAAAGAAAAGATGGATACGACATTGTTATCAGCGATGTAAACATGCCGGACATGGATGGCTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCGGTAGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCAATTCGAATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCAAGAGAATTTGAAGGTCACGAAGGATTTGAGGGCATTCATTTAATGAGAAACGGATCAGATCAGTCTGATGAAGGGTTGTCATTTGCCCTAGAAGATATGACCTCCATGAAGAAAAGAAAAGACCTTGATAACAAGCATGATGACAAAGAATACGGAGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTTAAAGCAGTAAACCAGATTGGATTTGACAAAGTTGGCCCCAAGAGAATTCTAGATTTGATGAATGTCCCATGGCTGACGAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGGACCAAGCCATCGGATTTTCCTCTAAAAGACTCTGCAGGAAATTTTGGATTTCAGAACTCAATAAACAGGCAGCAAAATGATGTTGCAGTTAACAGCTACAAATATTCAGATGTAACGTTACAGAGTCATGCTTCTGAAACGAAGATTCACGACGGTGATCTAAAGGCTATTGTTTCAGATTCTGCATCAGAAAAAAGAAGAGCTTTGTCTAGCATCATTCCTGATGCAAAGGTATGTTCCAATATAAGCCTTAACCATTCTTCTTTTGGACCTCTTGAGTCAGAAGGAAGCCATACAGTATTTGATTGCACCATCCCAACAACACAGTACAGCTGGAGTGAAGCTCCAGAAATGCCACTCCAGAAAGAACACAAGTCATTTCTTCAATTAAAAGATAGCTTCAGCCAGTTACCATTACACGTCAGGAAGCACCCGATTCAAGTTGACCAATCACATTCAAATGCTTCAGTTAGTTCCAACCCCTCTATCACAGAGGGAGAGATTGCTGCCTGTATTGAAACTAAGCCCATGTATGCTGATTTCAAAAGTGGTTATGCTAGTCCTGTGAGCTCAATAGGGAGTGTAGTGGACACCTTTCCTACTCAGTCCAAGAGCTTTATGGAGAATGTTCAGCTCTCAGAACCAACCTCAACTAAGAATTTGGGCATGAAAACTCAGGGCTTCAATCTAGGCTGCAATTCTGATCTAGAATTTTACCCTGAAAACCTAATTTTGGGAGGCGAGGTGGCTTCTGAACCTTCGGATGAGGACTTGCACTTCTATTGGCTGCAAGCTGAACGCTACAATATGAACTGGGGACTGGAGAATATAGAGATGCCAGAGTATTATGATCCAGGTCTTGTTGCAGAACTTTCAAGTCACCTACATGATTCAGCAGATTATACTCTGGTAGATCAAGGACTATTCATAGCATAA 1743 0.4228 MDSGFSSPRRDNFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEGIHLMRNGSDQSDEGLSFALEDMTSMKKRKDLDNKHDDKEYGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQRSSSSGTKPSDFPLKDSAGNFGFQNSINRQQNDVAVNSYKYSDVTLQSHASETKIHDGDLKAIVSDSASEKRRALSSIIPDAKVCSNISLNHSSFGPLESEGSHTVFDCTIPTTQYSWSEAPEMPLQKEHKSFLQLKDSFSQLPLHVRKHPIQVDQSHSNASVSSNPSITEGEIAACIETKPMYADFKSGYASPVSSIGSVVDTFPTQSKSFMENVQLSEPTSTKNLGMKTQGFNLGCNSDLEFYPENLILGGEVASEPSDEDLHFYWLQAERYNMNWGLENIEMPEYYDPGLVAELSSHLHDSADYTLVDQGLFIA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2121 580 SMART REC_2 17 129 IPR001789 GO:0000160
Prci4g2121 580 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Prci4g2121 580 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Prci4g2121 580 MobiDBLite consensus disorder prediction 259 274 - -
Prci4g2121 580 CDD REC_typeB_ARR-like 19 133 - -
Prci4g2121 580 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Prci4g2121 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 312 IPR045279 GO:0009736
Prci4g2121 580 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Prci4g2121 580 SUPERFAMILY CheY-like 16 140 IPR011006 -
Prci4g2121 580 MobiDBLite consensus disorder prediction 258 278 - -
Prci4g2121 580 FunFam Two-component response regulator 17 180 - -
Prci4g2121 580 Gene3D - 195 258 - -
Prci4g2121 580 Gene3D - 17 181 - -
Prci4g2121 580 FunFam Two-component response regulator 195 258 - -
Prci4g2121 580 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2121 Prci-Chr4 33455524 33459840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2121 11 265 Response Regulator Gene Family AT2G25180 55.212 2.68e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci4g2121 Response_reg 2.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2121 K14491 - gmx:100778324 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2121 4 33455524 33459840 Prci4g2121 4 33455524 33459840 ECH