Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2092 ATGGATTCCGATTCAGACTCAGATGCTTCTCATGTCTCCGCTACGCCCCCCAGAGAAGAGCCTCCATCAGCCTTGCCTTCACATCCGCCGCCGCCGACGAAGAAACCTGTTCTCGTTCCTAATAAATTGAAATCGTCTTCCTCGTCTTGCTTGAAATATTCAAAACCCAAATTACGCTCTTCAAGACCAACAAAAGCGTCGTCCAAACCGGAATTCACTCAAGAAGAATTGCCTGGTAACTCCTTTGGCCACCCTACTCCACCCTTCCAAATCCGTCGACCTTCTGACTGTGTTACCCAACTGTCAACTGCGCAGTACTTTGAAACCCTCCCAGCTGGCTACTTCTCCAAGTCCGTGTCTTTCTCGAAAATTCGAAGGCCATTCCTCAGTTTTGCAGATTCATCTGGAAATGAACCTCCCCTTGATTTTGCATCTAATCCAGGCCTCAAGAACGAGAGTAATGAAAGTTATTATCAGCAGGGTGATTCTATTCCTCTAGGTTTAGAGGGAAAAAGTCTAAGTGCAAGGAATATGACAAAATTAGGAAAGAGACATCCTAATCTCATTGGAGCTAATGTGCCGGCGCCATCTATAAAGGTGCGAAAATGTGGCAGCGAGGGAAATTTTGTGAGGTTGAACCTGAATAGCAAGAGGTGGAAGTCTCGGAACCGTGGGAAAAAGAAAAATTTTGCATATAGTAAGCGTAGAAGTTACATGAGAGATAAAGTTAAATCGAAACATGAAGATGAGGATCAAATGCAGTCGGTCTACGAGCCCAAGGAGGATACGTTTGTAGTGCGGACAGCGCAAAAGAAGTCCAGGGATCCTCGTGGAACCAAAGAATTTAATTGCGAAATGATTGAAGAGGCGATTTCAGCAGTTCGAGATGTCCCATCTGACGAGAACCTGGTGAAGTTGCTACAATTAGTTTATGGCCACGATGCTTTTCGGGATGGTCAGTTGGAGGCAATCAAGCTGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACTGGTGCTGGAAAGTCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCCTGGTCGTCAGTCCATTGGTAGCCTTGATGATTGATCAACAAAGAAAATTGCCTCCTATGATTAATGGAGGGTTTCTATGCAGCAGTCAGACACCTGAAGAATCCTCTGAAACGCTGAAGCAGCTTCAAGAAGGTGCATTAAAGGTGCTTTTTGTCTCACCAGAGAGGTTACTGAATGAAGAGTTCATGTCAGTAATTTCTTCCTCTTCAACTGTTTCTCTTGTTGTGGTTGATGAAGCCCATTGTATATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTCAGGGCATCTTTTCTCCGCAATAAGCTAAATGCAGGTTCTATTCTGGCAATGACAGCGACTGCTACAGCCATAACTTTAAATTCCATCATGTCTGCTTTAGATATTCCTTGCACAAATCTTATTCAGAAGACAAAGTTATCGGATAATTTGCATTTATCTGTTTCCTTAGCAAGAAATAGAATGAAAGACTTGTTGATGCTGATCAAGTCTCCTCCATATGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAGCTGATATAATTAGCAAATACTTGAGTGACAACAATATCTCTGCGAAGAGTTATCATAGCAGTATCCCTGCAAAGGAGCGTAGCTATGTGCAGGAGTTGTTTGGTTCCAACAAGATCAGGGTGGTTGTTGCAACTGTTGCATTTGGCATGGGATTAGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTATGTGCAGGAGATTGGACGTGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCACCTATTTTATGATGATGAGACATATGTCAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCGGTGAACAAGTTCCTCTGCGAAGTATTTCCTGCTGACAGAATTTCCAACGGCCAAATATGTTCCTTGATCAAAGAATCTGCTTCACGCAGGTTTGATATAAAGGAAGAGGTGATGCTGACACTTTTGACGCGCTTGGAGCTGGGCAATGTGCAGTACATACGTTTACTTCCACAGATAAATACCACTTGCACTTTGAGTTTTCACAAGACTCTCCCTACATTACTTGCCCAAAAGGACTCTGCTGTTGCTGCAATTCTGAAAAGGTCTGAAAATAAGCAAGGGCTATATGTCTTTGACATGCCCTCTGTGGCTAATGACATGGGAGTTACAGTTGTTGAGCTATCAAATCAATTGCACAATCTAAAGTTGCTTGGAGAAATAACTTTTGACACGAAGGACTCGGCCTATTGCTATATCATTGTCAAAGCACCAACAGATTTTTTTTCGTTGTCGGCAGATCTTACACGATGGTTATATGAGTTTGAAGGATCAAAGGTACGGAAACTGGATGCAATGTTTGATGCGGCATATCATGCAGTAAATATTTGTGACAAGATGCCAGGTTGCAGTAGTTCTAATCACACACCATGCTTGCAAAGAAAGATATTAGATTACTTTGCTGGAGTCGATAATAATTCCATGTACAAGAAGTTGGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCAAATTCACGCCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCCGCTGTTTGGTCTAAAACTCATTTCTGGGGACGGTATAGGCATGCGGACTTTCAGGCGGTGATGGAAGCCGCAAAGGAAGAACTCAAGAATTTTGTTGGAAAAGACGGCAGCTCTAGCCATTTAAGATAA 2877 0.4303 MDSDSDSDASHVSATPPREEPPSALPSHPPPPTKKPVLVPNKLKSSSSSCLKYSKPKLRSSRPTKASSKPEFTQEELPGNSFGHPTPPFQIRRPSDCVTQLSTAQYFETLPAGYFSKSVSFSKIRRPFLSFADSSGNEPPLDFASNPGLKNESNESYYQQGDSIPLGLEGKSLSARNMTKLGKRHPNLIGANVPAPSIKVRKCGSEGNFVRLNLNSKRWKSRNRGKKKNFAYSKRRSYMRDKVKSKHEDEDQMQSVYEPKEDTFVVRTAQKKSRDPRGTKEFNCEMIEEAISAVRDVPSDENLVKLLQLVYGHDAFRDGQLEAIKLVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQQRKLPPMINGGFLCSSQTPEESSETLKQLQEGALKVLFVSPERLLNEEFMSVISSSSTVSLVVVDEAHCISEWSHNFRPSFMRLRASFLRNKLNAGSILAMTATATAITLNSIMSALDIPCTNLIQKTKLSDNLHLSVSLARNRMKDLLMLIKSPPYVEVQSIIIYCKFQSEADIISKYLSDNNISAKSYHSSIPAKERSYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFYDDETYVKLRSLMYSDGVDEYAVNKFLCEVFPADRISNGQICSLIKESASRRFDIKEEVMLTLLTRLELGNVQYIRLLPQINTTCTLSFHKTLPTLLAQKDSAVAAILKRSENKQGLYVFDMPSVANDMGVTVVELSNQLHNLKLLGEITFDTKDSAYCYIIVKAPTDFFSLSADLTRWLYEFEGSKVRKLDAMFDAAYHAVNICDKMPGCSSSNHTPCLQRKILDYFAGVDNNSMYKKLDQSSPFLRADIKVFLQSNSQAKFTPRAIARIMHGIASPAYPSAVWSKTHFWGRYRHADFQAVMEAAKEELKNFVGKDGSSSHLR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2092 958 Pfam Helicase conserved C-terminal domain 530 625 IPR001650 -
Prci4g2092 958 CDD SF2_C_RecQ 502 635 - -
Prci4g2092 958 FunFam ATP-dependent DNA helicase Q4 284 494 - -
Prci4g2092 958 Gene3D - 503 691 IPR027417 -
Prci4g2092 958 NCBIfam RecQ family ATP-dependent DNA helicase 306 651 IPR004589 GO:0004386|GO:0006310
Prci4g2092 958 Pfam DEAD/DEAH box helicase 318 477 IPR011545 GO:0003676|GO:0005524
Prci4g2092 958 MobiDBLite consensus disorder prediction 40 75 - -
Prci4g2092 958 SMART ultradead3 312 508 IPR014001 -
Prci4g2092 958 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 431 440 IPR002464 -
Prci4g2092 958 MobiDBLite consensus disorder prediction 1 88 - -
Prci4g2092 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 644 IPR027417 -
Prci4g2092 958 PANTHER DNA HELICASE RECQ FAMILY MEMBER 291 846 - -
Prci4g2092 958 SMART helicmild6 545 626 IPR001650 -
Prci4g2092 958 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 672 IPR001650 -
Prci4g2092 958 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 494 IPR014001 -
Prci4g2092 958 Gene3D - 287 493 IPR027417 -
Prci4g2092 958 MobiDBLite consensus disorder prediction 19 37 - -
Prci4g2092 958 FunFam ATP-dependent DNA helicase Q-like 5 502 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2092 Prci-Chr4 32522336 32532756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2092 535 658 Eukaryotic Initiation Factors Gene Family AT3G19760 32.540 3.41e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2092 K10730 - qsa:O6P43_023885 1161.36