Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2080 ATGATGGTGCTCGTAAGCTCAGGCTCAGGGCTCAGAAAGCAGGTGGTTCCTATTGATTATGAATCAGAGGTTTCGCAAAGGCTCGTCGACGCTGCTCATGACGGCGATACCGACGCTGCTTTAGAATGTATTGCCGATCCTTTTGTCGACGTCAACTTCGTCGGAACGGTGAACCTCAGGTCCAGAACGACGGAGATTGTGTTGCACGACGAGTCGTCTCATGAAGTCCGATTCGGATACGAGGAGTTCAAAACGGAGGTCACTGCACTGTTTCTTGCTGCTCATGCAGGGAATTTGATCCTGCTCAGAAAGCTCGTGAATGTTGGAGGTAATGTGAATCAGAGATTGTTCCGGGGCTATGCCACAACGGCAGCAGTGAGGGAAGGCCACCTACAAGTTCTGGAGATGCTCATCAATGCCGGAGCGGCTCAGCCGGCATGTGAAGAGGCTCTGATGGAAGCAAGCCTCGTGGATCGGCCTACATTTGCTGAGCTGCTCTTGGATTCCAACATGATACGTCCTCAAGTTTCTGTTCATGCTCTTGTCTCTGCCTCTTGCCGAGGATTCACAAATGTTGTCCATGTACTCCTCAAGCATGGGGTGGATGCCAATGCCATTGATAGGACGTTGCTTCAATCTTCAAAGCCATTTCTCCACGCTAATGTTAATTGCAATGCATTGTTCGCAGCTGTTGTTAGCAGGCAGATCGATGTTGTGAGATTGCTCTTGCAGGTTGGAGTAAGGACTGATATTAAGGCCAAACTAGGGGCTTGGACATGGGAAACTGATAGTGGAGAAGAACTTCGTGTGGGTGTGGGATTAGCTGAGGCATACCCAATCACCTGGTGTGCTGTGGAGTATTTTGAAGCTAGTGGAGCTATATTGAGTATGTTGCTATTTCACCTCTCGCCCAACAGTTTTCACTTTGGAAGGACTCTTCTGCACCATGCGATTCTTTGTGATAACAAAAAAGCTATGATTGTGATCCTAAATTACGGTGCAAATACAGAATTGGCCATGCAAATGACTAAGGAAACAAATTTATGCCCCATTCACATGGCTACAAGGCTTGGATTACGCGACATTCTTCAATGCCTACTTGATGCTGGTTGTAACTTGGACTCCCAAACAAAATCTGGGGATACTGCATTAATGATCTCCACAAGGCATAAGCATGAAGATTGCCTTAAAGTGTTGGTCTCAGCAGGAGCTGATATGGGAATGGTAAATTCATCTGGTCAATCTGCGATGTCGTTTGCAAAGTCTGTTAAGTGGACAAACGTCTTCCAGAAAGTAATCTTGGACTTGATTCGAAGCGGAAAGGTTGTCAAATCGAGCAATGCCTCCACATTTTCTTCTTTGATTTTTGCAACTCGTGCTAATGACACACAGGCTTTGAAGGAACTCATTGAACGTAGAAACATAAATTTAGATGAACAAGATGAAAATGGATTCTCAGCCACCATGATAGCTGTAATAGAAGGTAAAGCAGAGGCTTTCAGGTTGCTTCTTAAAGCTGGAGCTGATGTTCTAAAGCTAAGAAACAAGCACGGTTTGACAGCTCTTGACCTTATAAACATGAACAAATCTGGAAAAGCTTTTGAGAAAATAATGCTTGAATTTGCACTTGAAAACGAATCTAATTGCTCCAATCTTGCGTTAAATCCTCTGCATCATGCTGCTCGCCATGGGGACACAGATCTGGTTCATAAATTAATCAAAAGAAGATTCGATATAAATGCTTTCGACCACAACGGATATACACCATTAATGTTAGCAGCAAAAGAGAGCCAAAGTAAAATGTGCGAGTTACTAATCTCATGTGGTGCCAAATGTGATATTCACAACAAGAGACATGAGACAGCTCTTTCACTTGCTAGAAAAAATGGAGCAGGAAATGATGCAGAGCGCGTAATATTCGACGAGCTAGCTCGAAGACTGGTTCTAGCCGAGGCTCGAGTAAAGAAGCACACAAGGTGTGGGAAAGGGTCACCGCATAGTAAAGAACTGAGAATGGTGGATGGTGTTGGAATTCTACGATGGGGAAAATCAAATAGAAGAAATGTGGTTTGTAAAGCAGCTGAGATTGGTCCTAGTGACAAATTCAGATGGAATCGTAGAAGGAAGTATGATGTTGATGAGCCAGGATTGTTCCATGTGGTCACTACAAAAAAGAAAGAGGTTCATTTTGTATGTGTGGGTGGTGCTGAAATGGCTCAGATGTGGGTGAGGGGTATTAAATTGGTCACCAAAGAAGCCATCTTTGGCAGAAACAACTGA 2280 0.4434 MMVLVSSGSGLRKQVVPIDYESEVSQRLVDAAHDGDTDAALECIADPFVDVNFVGTVNLRSRTTEIVLHDESSHEVRFGYEEFKTEVTALFLAAHAGNLILLRKLVNVGGNVNQRLFRGYATTAAVREGHLQVLEMLINAGAAQPACEEALMEASLVDRPTFAELLLDSNMIRPQVSVHALVSASCRGFTNVVHVLLKHGVDANAIDRTLLQSSKPFLHANVNCNALFAAVVSRQIDVVRLLLQVGVRTDIKAKLGAWTWETDSGEELRVGVGLAEAYPITWCAVEYFEASGAILSMLLFHLSPNSFHFGRTLLHHAILCDNKKAMIVILNYGANTELAMQMTKETNLCPIHMATRLGLRDILQCLLDAGCNLDSQTKSGDTALMISTRHKHEDCLKVLVSAGADMGMVNSSGQSAMSFAKSVKWTNVFQKVILDLIRSGKVVKSSNASTFSSLIFATRANDTQALKELIERRNINLDEQDENGFSATMIAVIEGKAEAFRLLLKAGADVLKLRNKHGLTALDLINMNKSGKAFEKIMLEFALENESNCSNLALNPLHHAARHGDTDLVHKLIKRRFDINAFDHNGYTPLMLAAKESQSKMCELLISCGAKCDIHNKRHETALSLARKNGAGNDAERVIFDELARRLVLAEARVKKHTRCGKGSPHSKELRMVDGVGILRWGKSNRRNVVCKAAEIGPSDKFRWNRRRKYDVDEPGLFHVVTTKKKEVHFVCVGGAEMAQMWVRGIKLVTKEAIFGRNN 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2080 759 ProSiteProfiles Ankyrin repeat region circular profile. 585 617 - -
Prci4g2080 759 SMART ANK_2a 552 581 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 85 114 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 222 253 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 379 408 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 483 512 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 585 614 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 309 338 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 176 205 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 346 375 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 117 147 IPR002110 GO:0005515
Prci4g2080 759 SMART ANK_2a 449 477 IPR002110 GO:0005515
Prci4g2080 759 Gene3D - 304 428 IPR036770 -
Prci4g2080 759 Gene3D - 429 542 IPR036770 -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Prci4g2080 759 PANTHER ANKYRIN REPEAT-CONTAINING 21 743 - -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Prci4g2080 759 SUPERFAMILY Ankyrin repeat 31 256 IPR036770 -
Prci4g2080 759 Gene3D - 543 635 IPR036770 -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Prci4g2080 759 SUPERFAMILY Ankyrin repeat 310 636 IPR036770 -
Prci4g2080 759 Pfam Ankyrin repeats (3 copies) 538 614 IPR002110 GO:0005515
Prci4g2080 759 Pfam Ankyrin repeats (3 copies) 341 408 IPR002110 GO:0005515
Prci4g2080 759 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Prci4g2080 759 Gene3D - 16 177 IPR036770 -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat region circular profile. 379 410 - -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Prci4g2080 759 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Prci4g2080 759 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Prci4g2080 759 Gene3D - 178 263 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2080 Prci-Chr4 32408916 32412435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2080 334 521 Ion Channels AT4G32500 28.272 8.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2080 - - gmx:100795638 1093.95