Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2072 ATGATGGATGCTGCCGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTCTCTATAATGTATTGCAAAGTATCGTCGATGTTTCCATCTTTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGCATTGAGGCTTTATGTTCATTGCATGTAGCCTTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATACTGTTCTTCTAAAATCTCAGAAGGCTAAATCTGCTATTAAAGACAGCCTTAAGCAGGTGGAAGATATTGTTCCGCGATCTATTGCATGTCAGTGTCAGGAGATTGTGAATGAATTTGATAGTATAGAATTTGCACTTGACCCATTGGAGAAGCAAGTTGGCGGTGATTTAATTGCACTGCTTCAGCAAGGGAGACAATGTAGCGGCTCTAATAATGATGGTAGTGAGCTTGAATGTTTTCACCAGTGTGCTATTAAACTTGGAATCACATCTTCAAGAGAAGCTCTTACAGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGAGCTAGGGCTGAAGAAGACGAGCAAAAGGAAACAATTGTTGCATATCTTTTACACCTTATGAGGAAATATTCGAAGTTATTTAAAAGTGAAATTTCAGATGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCACTACACAAGGACCTGTTGAGTGCAGCGTTCCTAGCTGTCAATCTCAGGCCCTCAAGAGAGAGATTTCAAAACGTTGTGCCATTAGTTTAAATCCAATTAATAGGAAATCAGGACAGATTCCTCTTCCGCCTCGAGAGTTGAGGTGTCCAATATCTTTGCAGCTTATGTATGATCCTGTCATCATTGTTTCCGGACAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGACACAACACTTGCCCCAAGACTCAACAGAAACTCGAGCAACTTTTGTTGATTCCAAATTACTGCGTTAAGGGTCTTGTCATTACCTGGTGTGAACAGAATGGAGTTTCTGTTCCCGATGGCCCTCCTGAATCTTTTGATATTAACTACTCGAGATTGGCTTCGTCAGAGCCAGAATCAACCAATTCAAAATCTGTAAACTCTTTGAACTCATGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGCAGTATCTCAGAAGAATCCAGAGTAGATAAAATGGAAGGTTTGTCTGCACAGGAGAAAGACACTGAGCAATATCTTGGGTTTCTGAAAGTTTTGGTCGAAGAGACCAATTACATGACAAAGTGCAATGTTGTTGAACAATTAAGGATATTATTGAGGGATAATGAGGAAGCCAGGAATTATATGGGAGCTCATGGGTTGGTTGAGGCGCTTCTGCGGTTTCTAAAGTCAGCTGTGTCTGAAGGGAATCAGAAAGCACAGGAAAGTGGAGCAATGGCTCTGTTCAACCTTGCTGTGAATAACAACAGAAACAAGGCAATTATGTTATCAGCAGGAGTATTACCATTGCTGGAGGAAATTTCTAGCTCAAGTTCATATGGTTATGCCACGGCCCTCTATCTGAATCTCTCATGCCTTGAAGAAGCCAAGACCAAGATTGGCAAGACACATGCTGTCCAATTCCTAATCCATCTCCTCCAAACCAACACCGAGGTTCAATGCAAGCAAGATTCCCTCCATGCTCTCTACAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCATTTCATCTGGAATCATCAGTGGCCTCTCATCTCTTCTCTCAGGCCAGAGTGATAATAATGATAATACTAATAATAGCACGTGGACAGAGAAATGCATTCATGTTCTGATAAACTTGGCTGCTTCTCATATGGGAAAAGAGCAAATAGTCTCAGCCCCTGGACTCATTAACATACTGGCTAAGAAACTAGAATCTAGTGAGCTCTTAGAGCAGGAACAAGCTGTGTCTTGTCTTTTAGTACTGTGTAATGGGTATGAGAAATGTAGCCGCATGGTCCTAAGAGAAGGTATAATACCTGCATTGGTTTTGATGTCTGTGAATGGAACACCAAGAGGGAAAGAAAAGGCTCAGAAACTTTTGATGCTCTTTCGAGAGCAACGACAACGAGATCCTTCGCCTGTTAAGACGCGTTTGTGTCCCCCTCCTGTTGCTGCTCCTGAAGCTAAGAAGAGTAATAATGTGGCTGTTCATGTTCATCCTCCTCCAGAAACCAAACCTGTGATGATCAAGTCCTTGTCTAGAAGAATAATTGAGAAGCCCTTTAGATTTTTCTCCAAAAGCAAGAGTTATTCTATTTTCCAGATTTAA 2355 0.4153 MMDAAEVEENLFAASDAKLHGEMCKALSIMYCKVSSMFPSLEAAKPRSKSGIEALCSLHVALEKAKNVLQHCSECSKLYLAITADTVLLKSQKAKSAIKDSLKQVEDIVPRSIACQCQEIVNEFDSIEFALDPLEKQVGGDLIALLQQGRQCSGSNNDGSELECFHQCAIKLGITSSREALTERRALKKLIERARAEEDEQKETIVAYLLHLMRKYSKLFKSEISDDNDSQGSAPCSPTTQGPVECSVPSCQSQALKREISKRCAISLNPINRKSGQIPLPPRELRCPISLQLMYDPVIIVSGQTYERVCIEKWFRDGHNTCPKTQQKLEQLLLIPNYCVKGLVITWCEQNGVSVPDGPPESFDINYSRLASSEPESTNSKSVNSLNSCKLKGVKVVPLEESSISEESRVDKMEGLSAQEKDTEQYLGFLKVLVEETNYMTKCNVVEQLRILLRDNEEARNYMGAHGLVEALLRFLKSAVSEGNQKAQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISSSSSYGYATALYLNLSCLEEAKTKIGKTHAVQFLIHLLQTNTEVQCKQDSLHALYNLSTVPSNIPNLISSGIISGLSSLLSGQSDNNDNTNNSTWTEKCIHVLINLAASHMGKEQIVSAPGLINILAKKLESSELLEQEQAVSCLLVLCNGYEKCSRMVLREGIIPALVLMSVNGTPRGKEKAQKLLMLFREQRQRDPSPVKTRLCPPPVAAPEAKKSNNVAVHVHPPPETKPVMIKSLSRRIIEKPFRFFSKSKSYSIFQI 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2072 784 Coils Coil 177 204 - -
Prci4g2072 784 Gene3D - 423 613 IPR011989 -
Prci4g2072 784 PANTHER U BOX DOMAIN-CONTAINING 22 716 - -
Prci4g2072 784 SUPERFAMILY ARM repeat 432 713 IPR016024 -
Prci4g2072 784 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Prci4g2072 784 SMART arm_5 540 581 IPR000225 GO:0005515
Prci4g2072 784 SMART arm_5 456 500 IPR000225 GO:0005515
Prci4g2072 784 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Prci4g2072 784 SUPERFAMILY RING/U-box 281 357 - -
Prci4g2072 784 CDD RING-Ubox_PUB 282 334 IPR045210 -
Prci4g2072 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Prci4g2072 784 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Prci4g2072 784 Gene3D - 614 716 IPR011989 -
Prci4g2072 784 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Prci4g2072 784 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2072 Prci-Chr4 32269856 32274485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2072 2 781 U-box Gene Family AT1G24330 61.090 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2072 - - gmx:100794099 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2072 4 32269856 32274485 Prci4g2072 4 32269856 32274485 ECH