Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2040 ATGGACTGGAGTGCAAAATCTTTTTCACAGTGGGACTGGGAACACCTACTTTTTAACACAAAAGCAACTGAGAATCCTAGGTTAAAACCGGTAGACTGGAGTGGCAAAGAAGATAGAGAAATCAATGTTGGCGTGTTCAATCCATCATGTGGTATTGATAGTTCTGGGTCTGTGCTGCGATATACTTCTTCATCAAGGGGCTCAAAATCAGCTTCCATCAATTCTTCATCAAATGGGTATAGCAGAACATCAGTGCTCACTTTTGAAGGATCCCAAGAAGATGCTAATGGTAAGAAAGAGAGGTCAAAAGAAGAGCCTCTTGGAAATTCTCCCGCACTTGAGCATTCTTCTGTCTCTGGTGAACCATTGCACAGTCTAAAGCTTGGCAAACGGCTGTACTTTGAAGATGCCTATGTTGGAAGTGATACAAAGAATGCATCTCACTCTGGGATTCCCATGCCATCTTTGAGTGCTGGGAAAAAATGTAAGTCAAATAGTCAGAGCTCACAACCTCCACTCTGCCAGGTTGAAGGCTGTAACCTTGACCTATCATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAATCATTCCAAATGCCCAAATGTCGTTGTAGGTGGTAAGGAGCGTAGATTTTGCCAGCAATGTAGCAGGTTCCACGGTCTCTCAGAGTTTGATGGAAAAAAAAGAAGTTGCCGGCGTCGTCTTTCTGATCATAATGCGAGGCGTCGGAAGCCTCATCCTGAAGTCCAGTTGAATTCATCATTTTTGTCCTCATCACCATATGATGGGAGGCAACAGATGGGCCCTTTTACTAATTCAACGGCCGCTATCAACTTTGCTTGGCAAGATGCATACAGCAGCCGCATCTCCCAAACGAAAGAATTTCTCATGAAAGCTGCAAAAGCAGGAGGTACCATTGGGCAGGTGCATCAGCCCTTCAATGAGATCCCAAGTACCTTTTCTAAGCTTTCTGAAGGTCCCGGTGGCCTTTGCACTTCCAAAGGCATAACAGCAAAGACTATCAATCCAGGGATAGAAGATTTCGTGACCTCATCAGATGATAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCACCTCTTGGGCTCCATGCGAGACGAAGTTTGCTTCTCAAGAGCACTCCAATCGCACAACTCCTACCGGTACGACTCCACCTGTAACGCACTCAATGATTCAGTGCTTGCCTTGTGCTTCGTCAGACTACTGGCAGACTTGTCAACATCCAGTCGATGCCCGTATCGGCATCTCGTCATACTCAGACTGTAAAGATGACTCTCACTTTGAAGATTTCCAGCTGTTCAGAGCACCCTATGAGTCTGGCTTTTGCAATCAGTTGGATTAA 1386 0.4524 MDWSAKSFSQWDWEHLLFNTKATENPRLKPVDWSGKEDREINVGVFNPSCGIDSSGSVLRYTSSSRGSKSASINSSSNGYSRTSVLTFEGSQEDANGKKERSKEEPLGNSPALEHSSVSGEPLHSLKLGKRLYFEDAYVGSDTKNASHSGIPMPSLSAGKKCKSNSQSSQPPLCQVEGCNLDLSSAKDYHRKHRVCENHSKCPNVVVGGKERRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNARRRKPHPEVQLNSSFLSSSPYDGRQQMGPFTNSTAAINFAWQDAYSSRISQTKEFLMKAAKAGGTIGQVHQPFNEIPSTFSKLSEGPGGLCTSKGITAKTINPGIEDFVTSSDDNATQDFHRALSLLSTTTSWAPCETKFASQEHSNRTTPTGTTPPVTHSMIQCLPCASSDYWQTCQHPVDARIGISSYSDCKDDSHFEDFQLFRAPYESGFCNQLD 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2040 461 MobiDBLite consensus disorder prediction 93 108 - -
Prci4g2040 461 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Prci4g2040 461 MobiDBLite consensus disorder prediction 61 91 - -
Prci4g2040 461 MobiDBLite consensus disorder prediction 239 261 - -
Prci4g2040 461 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Prci4g2040 461 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 324 IPR044817 GO:0003677
Prci4g2040 461 Pfam SBP domain 174 247 IPR004333 GO:0003677
Prci4g2040 461 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Prci4g2040 461 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Prci4g2040 461 MobiDBLite consensus disorder prediction 61 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2040 Prci-Chr4 31594793 31600200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2040 1 418 SBP-box Gene Family AT5G43270 39.261 8.95e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g2040 SBP 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2040 - - pcin:129309383 936.791