Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2025 ATGGATGGCAATGTTGTGGGAACCTTGAATGGCAATGGAACATTTTCAGCGGAATCATCAACATCTGGATCAGTTAAGAGAAGCAGAACGCCTAGCAGTGGAATCCAAGTTGCTTCATGTTTGGTTGATGGGTGCAATGCAGACCTTAGTAAGTGCAGGGACTATCACAGACGCCATAAGGTTTGTGAACTTCACTCTAAGACCCCAAAGGTTACAGTCAAGGGTCAGGAACAACGCTTCTGCCAGCAGTGCAGCAGGTTCCATTCATTGGTGGAGTTTGATGAAGGAAAGCGAAGCTGCAGGAAACGTCTTGATGGGCACAACCGACGCCGGAGAAAGCCTCAACCAGAACCCCTGCCGATGACCTCGGCAAGATTTCTTGCTGAATGCCCAGGTACTGGAATCTTAGCATTCGACGATCAGAAAATCCGTCCAACGGATCCTAGTTTGAGCAGTTGTTGGGATGGACCTATTAAAGCTGAGAATGATCATTATTTGTCCTTCACGTTTGATGGTAGGAATGGGCCAATTGGTAAAACTTTGAGTTATCAAGGAGAGGGACAGAGACAGTTTTCCTTTCTTCAAGGCTCAAAATCTACATACTATGGATATTCTGCGAGTGAACTAAACTCACATTCCAACATGACATCAGAAAATGCAGGTAAGAACAATAACCAGAAAGCATTCTCATATAATGCTCGCTCTCTTCTGTCATCAACACCACCTGAGACTCATGAGGTAGGCTTAAGACGCACGATTCTTCCAAATGCTATCCCTTCTTCACCTCTGAACCTGGATTCTTCAGAAATGGTGAGTCATGCCCATAATAATACTACTAATAGAGATGCCATGATGTTTAGTTTTGGATCTGATGGGTCGTCTTCTTGTGATGCCCCACACAAATTCCTCTTGTGGGAGTAA 921 0.4473 MDGNVVGTLNGNGTFSAESSTSGSVKRSRTPSSGIQVASCLVDGCNADLSKCRDYHRRHKVCELHSKTPKVTVKGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQPEPLPMTSARFLAECPGTGILAFDDQKIRPTDPSLSSCWDGPIKAENDHYLSFTFDGRNGPIGKTLSYQGEGQRQFSFLQGSKSTYYGYSASELNSHSNMTSENAGKNNNQKAFSYNARSLLSSTPPETHEVGLRRTILPNAIPSSPLNLDSSEMVSHAHNNTTNRDAMMFSFGSDGSSSCDAPHKFLLWE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2025 306 ProSiteProfiles Zinc finger SBP-type profile. 37 114 IPR004333 GO:0003677
Prci4g2025 306 MobiDBLite consensus disorder prediction 1 31 - -
Prci4g2025 306 SUPERFAMILY SBT domain 38 118 IPR036893 GO:0003677|GO:0005634
Prci4g2025 306 Pfam SBP domain 40 113 IPR004333 GO:0003677
Prci4g2025 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 233 IPR044817 GO:0003677
Prci4g2025 306 FunFam Squamosa promoter-binding-like protein 14 31 101 - -
Prci4g2025 306 Gene3D - 31 101 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2025 Prci-Chr4 31263972 31266685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2025 36 200 SBP-box Gene Family AT5G50670 46.667 2.31e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g2025 SBP 4.9e-31 No_clan