Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1988 ATGGTTGGCCCCAAATCGCGGAGCTCTGAAAGCGTTCCTTGCGATTTCTGTACCCAACAAACAGCTGTTCTGTATTGCAGAGCTGACTCCGCCAAGCTCTGTTTGTTCTGCGATCAGCAGGTTCATTCCGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCACCTCTGAGCTCGCCTCCGTACGATGCAACACCGACAACCTTGTTCTCTGCCAAGACTGCGATTGGGACGCTCATGCCTCCTGCTCCGTCGCCGCCTCTCACCATCGTACCTCTGTTGAGGGTTTCACTGGTTGTCCATCTGCATCTGAACTCGCTTCGCTATGGGGGTTTCATTTTGAGACCAAGGCTAGAGATCAATCTCCTTCTTCTTTGATTCAAGACTGGGGTGATTATCGGGATTTGTTTGTGCCCCTCGAATCCTGCCTGTTTAAATCTGATGGCGTCCCTCTTCAAGTTCATGACCTCATGGTTCCCAGAGAAACCGGTATGCTTTACCCGTCACAGGATTTCCAGGCGCTCTGTAACGCTCCCAAGAAACAAACTCCCTTGTGTGGGAAGCAGAAGCAGGTTATACACAAGCAGTTGGTGGAATTGCTCAAGAGGGATTCGGTGGTTGTTGATGCTGGTGGCGGTGGCGGTGATGTTGACGGTGACGGTGGTGCTATTCCAGCTCGGATAAGTGCTGCTAATGAGGCTGAGAATTTGGTTCCTGAAGCGCCGAGAAAGTGCCAGGGGAATGGGCAACCATTTGTTTTGGGAAAGGAGGTTCAAGAATTCCCAGCACTTGCTGCTTCTCAGCAACCATTGCAGCAACAGGCGCCAGTTACGTCTCCGTTTATGATGCCTTCGCAGTTGCATCATCATAATGGAGGCGATCGATCATGGAACAATAATCCCAGCAAGCACTCTATTCAGATATGGGATTTCCATTCTGGACGACTTAGGGATCAGGAAGAATCAAGTGCACTTGAAGCTGCCTATGTTGCAAGTGATGGTGGATTTGTGGCTAAGAATTTTAGTGAACTTATCAGAGAATCATCCATGACTGACACAAAATTGTTGCAAGATATATATAATATGAATATTGCTTACAATGACATGGCATCATATAATAACATGTCAAATAACCCAACAACGGCAAGTCAGGGGCCTGCAGCAACATCAGAGAGCAACAACATACCAAAAAGAAAGCAATCTGGGAATCCAGCTGCTCCTGGAAAGCACAAAGGTGACTATAGTGTCAAGGAGACACAGATTGGGGAACATCCTTTGCTTGTTACAGGTGACAACATGGGAAATGCAGGAAGAAGCAAGGCTGACATGGACCTGTTAGCCCAAAACAGAGGCACTGCAATGCTCCGTTACAAGGAGAAAAAGAAAACTCGAAGGTACGAGAAGCACATACGATATGAGTCTAGGAAGATGAGAGCTGACACACGGAAGCGAGTCAAAGGCCGATTTGTGAAGGCTAGTGACGTCGATGCTCCTATTACTTAG 1518 0.4802 MVGPKSRSSESVPCDFCTQQTAVLYCRADSAKLCLFCDQQVHSANLLSRKHLRSQICDNCTSELASVRCNTDNLVLCQDCDWDAHASCSVAASHHRTSVEGFTGCPSASELASLWGFHFETKARDQSPSSLIQDWGDYRDLFVPLESCLFKSDGVPLQVHDLMVPRETGMLYPSQDFQALCNAPKKQTPLCGKQKQVIHKQLVELLKRDSVVVDAGGGGGDVDGDGGAIPARISAANEAENLVPEAPRKCQGNGQPFVLGKEVQEFPALAASQQPLQQQAPVTSPFMMPSQLHHHNGGDRSWNNNPSKHSIQIWDFHSGRLRDQEESSALEAAYVASDGGFVAKNFSELIRESSMTDTKLLQDIYNMNIAYNDMASYNNMSNNPTTASQGPAATSESNNIPKRKQSGNPAAPGKHKGDYSVKETQIGEHPLLVTGDNMGNAGRSKADMDLLAQNRGTAMLRYKEKKKTRRYEKHIRYESRKMRADTRKRVKGRFVKASDVDAPIT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1988 505 SMART bboxneu5 57 99 IPR000315 GO:0008270
Prci4g1988 505 SMART bboxneu5 9 56 IPR000315 GO:0008270
Prci4g1988 505 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 498 - -
Prci4g1988 505 CDD Bbox1_BBX-like 13 56 - -
Prci4g1988 505 ProSiteProfiles CCT domain profile. 455 497 IPR010402 GO:0005515
Prci4g1988 505 MobiDBLite consensus disorder prediction 380 419 - -
Prci4g1988 505 MobiDBLite consensus disorder prediction 380 405 - -
Prci4g1988 505 Pfam CCT motif 455 497 IPR010402 GO:0005515
Prci4g1988 505 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Prci4g1988 505 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Prci4g1988 505 Pfam B-box zinc finger 11 52 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1988 Prci-Chr4 30055239 30058726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1988 8 503 C2C2-CO-like Transcription Factor Family AT1G28050 40.675 4.45e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci4g1988 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1988 - - pcin:129307671 999.193