Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1965 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATGCAATGCCTGGAGGACAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTCACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGTGACATTGCATTTGCAAGTGCTTTGGAAGCTTTTGGTGGTGGCCATAATGATCCCATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAGGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACACCAATTTGTTAATTTTGATTTGCTTGAAGTCAAGGAAGCACGCAGGCGTTTTGACAAGGCCAGTCTTATTTACGATCAGGCTCGTGAAAAGTTCCTGTCTTTAAGAAAAGGCACAAAATCAGATGTAGCTACTGCACTTGAAGAGGAGCTTCATAATGCAAGATCCACATTTGAGCAAGCTCGATTTAATCTGGTAACTGCTCTGTCCAATGTTGAAGCTAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGAACCATGGATGCACATCTTCGCTACTTCAAACAGGGGTATGAGTTGTTGCACCAAATGGAGCCATATATTAACCAGGTCCTGACATATGCTCAACAGTCAAGAGAAAGATCCAAGTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGGTTGATCGAGAGAGTAGATGGTCTTCCAATGGTTCTAATGGGTCTCCTAATGGTGACGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTTTCAAAGCGGTCTTCTAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGGCTCTTGAGCCGATGGCTGTCTTCTCATCACCATCATGGTGGGGTACATGATGAAAAATCTGTTGCCCATCACACAGTGAACCTGCTTACATCAACAATAAAAGTTGATGCTGACCAATCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGCTCTCAGATTCCTGAAAGGTGTCTTCCAGCTAGTCCAATGGGAAGTGGTCACAATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTGGAAGAATATAAATCAGATAGAGGTCTTGCTTCTGCACATATTGAACGCCCCTCAAGAGGCTTGCAGCAGCAGCAACGATCTTGTATCAAAAGTGAGAAGCCAATTGATGTTTTGCGAAGAGTTCGTGGAAATGATATATGTGCTGATTGTGGAGCACCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCACCGTAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACCCTAGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATGCTTTTGCCAACTCCGTCTGGGAGGAATTGTTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCACAGGGTCCGACAGACCACAGGTTTTCTTCATCAGCAAACCTTGCCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTACGCAGAGAAGTTTTTTGTTCGCAAGCCAAAGGACAATCAATATCGTCTCTTGGTGGCACAACATATATGGGATGCTGTTCGTGCTAATGACAAAAATGCTGTGTACCGCTACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTATGAGCAAACATGCAGCCCTTCTTTAACCCTTGCGAAAGTGATGCTATTACAAGAGCAGACTGGCCATGATCACAACTCTACTTTAACAGGGAACTCATTCGACTGGTCCTCTACTTGTCCTTTGAATATTGTGGGAGCAAAAGAAGATCAGACCATGAATGATCTGGATGGGTGCACCCTACTTCACCTTGCTTGTGAAACTGCAGACATTGGCATGCTGGAGCTCCTTCTTCAGTACGGTGCAAGTATTAATGCCACTGACATGAGAGGCCAAACACCTCTCCATCGCTGCGTTCTCAAGGGAAGATCTACATTGGCAAGATTACTTATCTCAAGGGGAGCTGATCCTCAAGCTGTCGATGAAGAGGGAAGAACCCCTCTTGACCTTGCTGTACTGTCAAACTTTGACGACAGTGAAGTGCTTGGTTTATTATCTGATTCAAACAGATGA 2487 0.4302 MQFAKLDDSPMFRKQMQCLEDSSESLRERSLKFHKGCRKYTEGLGEAYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLHQFVNFDLLEVKEARRRFDKASLIYDQAREKFLSLRKGTKSDVATALEEELHNARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSKYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAVEEYKSDRGLASAHIERPSRGLQQQQRSCIKSEKPIDVLRRVRGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQIDLVPTGSDRPQVFFISKPCQSDSLSVKEKFIHAKYAEKFFVRKPKDNQYRLLVAQHIWDAVRANDKNAVYRYIVNYEVDVNAVYEQTCSPSLTLAKVMLLQEQTGHDHNSTLTGNSFDWSSTCPLNIVGAKEDQTMNDLDGCTLLHLACETADIGMLELLLQYGASINATDMRGQTPLHRCVLKGRSTLARLLISRGADPQAVDEEGRTPLDLAVLSNFDDSEVLGLLSDSNR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1965 828 SMART arf_gap_3 501 643 IPR001164 GO:0005096
Prci4g1965 828 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Prci4g1965 828 CDD ArfGap 504 630 - -
Prci4g1965 828 Gene3D Arf GTPase activating protein 482 642 IPR038508 -
Prci4g1965 828 Gene3D - 285 438 IPR011993 -
Prci4g1965 828 MobiDBLite consensus disorder prediction 253 269 - -
Prci4g1965 828 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 644 - -
Prci4g1965 828 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Prci4g1965 828 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Prci4g1965 828 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Prci4g1965 828 Coils Coil 151 171 - -
Prci4g1965 828 ProSiteProfiles Ankyrin repeat region circular profile. 768 800 - -
Prci4g1965 828 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Prci4g1965 828 MobiDBLite consensus disorder prediction 246 269 - -
Prci4g1965 828 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Prci4g1965 828 ProSiteProfiles Ankyrin repeat region circular profile. 735 766 - -
Prci4g1965 828 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Prci4g1965 828 PANTHER CENTAURIN/ARF 3 826 IPR045258 GO:0005096
Prci4g1965 828 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Prci4g1965 828 CDD BAR_SFC_plant 14 215 IPR035670 -
Prci4g1965 828 Pfam Putative GTPase activating protein for Arf 504 638 IPR001164 GO:0005096
Prci4g1965 828 SUPERFAMILY PH domain-like 205 427 - -
Prci4g1965 828 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 643 IPR001164 GO:0005096
Prci4g1965 828 SMART ANK_2a 768 797 IPR002110 GO:0005515
Prci4g1965 828 SMART ANK_2a 735 764 IPR002110 GO:0005515
Prci4g1965 828 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Prci4g1965 828 ProSiteProfiles Ankyrin repeat profile. 768 800 IPR002110 GO:0005515
Prci4g1965 828 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Prci4g1965 828 Pfam PH domain 294 427 IPR001849 -
Prci4g1965 828 Coils Coil 227 247 - -
Prci4g1965 828 MobiDBLite consensus disorder prediction 441 462 - -
Prci4g1965 828 Pfam Ankyrin repeats (many copies) 738 789 IPR002110 GO:0005515
Prci4g1965 828 MobiDBLite consensus disorder prediction 447 462 - -
Prci4g1965 828 CDD PH_ACAP 295 432 - -
Prci4g1965 828 SMART PH_update 293 430 IPR001849 -
Prci4g1965 828 SUPERFAMILY Ankyrin repeat 658 815 IPR036770 -
Prci4g1965 828 Coils Coil 118 138 - -
Prci4g1965 828 SUPERFAMILY ArfGap/RecO-like zinc finger 501 638 IPR037278 -
Prci4g1965 828 Gene3D - 643 823 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1965 Prci-Chr4 29583462 29594375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1965 502 637 C2H2 Transcription Factor Family AT4G21160 42.657 3.38e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1965 K12489 - gmx:100789134 1387.09