Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1927 ATGTCGAGCTGCAGCAATATGGACGTTGCTTCTGAGCAACTTTGCTATATCCCCTGCAAATTTTGCAACATTGTTCTTGCGGTTAGTGTTCCATGCAGTAGTCTTTTTGACATCGTGACCGTCCGATGTGGTCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCATTTCAGTCACTGTCATGGCAACAAGTTCAGGCTTCAGGGACATCCAATCCAGAGTATAGAATCGAGACTGACTCATCTTCTATATGCAACAATAGGATTGCAGTGCGAGCTCCCACCACACGTATTGCAACTGAGGAAATGCCTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCGTACAATCAATTCATAAAAGAAGAGATTCAGAGGATCAAAGCCAACAACCCAGATATCAGTCACAGGGAAGCATTCAGTACAGCTGCAAAGAATTGGGCACATTTCCCTCATATTCATTTCGGCTTGATGCTGGAGGCCAATAATCAAGCTAGGATGGGGAATTAA 522 0.4655 MSSCSNMDVASEQLCYIPCKFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQQVQASGTSNPEYRIETDSSSICNNRIAVRAPTTRIATEEMPVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQARMGN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1927 173 CDD HMG-box_SF 115 151 - -
Prci4g1927 173 Gene3D High mobility group box domain 101 156 IPR036910 -
Prci4g1927 173 FunFam axial regulator YABBY 5-like 99 157 - -
Prci4g1927 173 Pfam YABBY protein 10 161 IPR006780 GO:0007275
Prci4g1927 173 SUPERFAMILY HMG-box 107 154 IPR036910 -
Prci4g1927 173 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1927 Prci-Chr4 28113664 28118174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1927 5 172 C2C2-YABBY Transcription Factor Family AT2G26580 74.405 2.48e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Prci4g1927 YABBY 5.2e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1927 K25796 - gmx:100499942 309.301