Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1926 ATGTCGAGCTGCAGCAATATGGACGTTGCTTCTGAGCAACTTTGCTATATCCCCTGCAAATTTTGCAACATTGTTCTTGCGGTTAGTGTTCCATGCAGTAGTCTTTTTGACATCGTGACCGTCCGATGTGGTCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCATTTCAGTCACTGTCATGGCAACAAGTTCAGGCTTCAGGGACATCCAATCCAGAGTATAGAATCGAGACTGACTCATCTTCTATATGCAACAATAGGATTGCAGTGCGAGCTCCCACCACACGTATTGCAACTGAGGAAATGCCTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCGTACAATCAATTCATAAAGTCACTGTTAACATACATGCAGAGAAGAGATTCAGAGGATCAAAGCCAACAACCCAGATATCAGTCACAGGGAAGCATTCAGTACAGCTGCAAAGAATTGGGCACATTTCCCTCATATTCATTTCGGCTTGATGCTGGAGGCCAATAA 522 0.4655 MSSCSNMDVASEQLCYIPCKFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQQVQASGTSNPEYRIETDSSSICNNRIAVRAPTTRIATEEMPVNRPPEKRQRVPSAYNQFIKSLLTYMQRRDSEDQSQQPRYQSQGSIQYSCKELGTFPSYSFRLDAGGQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1926 173 PANTHER PROTEIN YABBY 6-RELATED 1 126 IPR006780 GO:0007275
Prci4g1926 173 Pfam YABBY protein 10 126 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1926 Prci-Chr4 28113664 28118174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1926 5 168 C2C2-YABBY Transcription Factor Family AT2G26580 54.268 1.07e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Prci4g1926 YABBY 4.6e-39 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1926 K25796 - gmx:100804731 216.853