Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1888 ATGAAACGGGAAGTACAGCTAGAACCGCCAGTTGCGCAAAACCTTGGTGATTCCGACCCTCTACTCGATAATCAGGAGAAGGAGGAGGAGGAAGAGCGGAAGGATGAGGAGTGTCAAGGAAGCACGAGTGAGATTAGGAGTGAAGATGTCGAGGCTGGCTTACTTCCTTCTTGTCGAATTTGCCTGGAAAGCGATTCCGACCCAGGTGATGAATTGATATCACCATGCATGTGTAAGGGGACCCAACAATTTGTCCATCGTTCGTGTCTTGATCACTGGCGTTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTCGAATTGAATTGTTTGAGGACAACTCCTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCTGTACAAACTGTGATTGCGGCAATGGGTGCGTTTGCATACCTCATGGACAAAGATGGGGCATTCAGGAACTCTTTCGATGATGGTTGGGATCGGATACTGTCAAATCATCCTATACCATTTTATTACACTATTGGAGTACTAGCCTTCTTTGTGCTGCTTGGGTTTTTTGGTCTCATTCTACATTTTTCCTCCCTCAATGCCAATGACTCCAGAATGGCTGGGTGTCAGAACTGTTGTTATGGATGGGGCATTTTGGATTGCTTTCCCGCATCAATGGAAGCATGCTTTGCCCTTGTGGTTGTTTTTGTCGTCATCTTTGCAATTTTGGGCATAGCTTATAGTTTTCTCGCAGCCACCATGGCGATTCAGAGAATTTGGCAGAGACATTACCACATACTGACCAAGAGGGAGCTGACTAAGGAATACGTAGTGGAGGATCTCCGAGGTTCTTATTCCCCGCCAAAACTGGACCCAGAACATGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 942 0.4575 MKREVQLEPPVAQNLGDSDPLLDNQEKEEEEERKDEECQGSTSEIRSEDVEAGLLPSCRICLESDSDPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRIELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAMGAFAYLMDKDGAFRNSFDDGWDRILSNHPIPFYYTIGVLAFFVLLGFFGLILHFSSLNANDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLRGSYSPPKLDPEHEERLKMLKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1888 313 SMART ringv_2 57 109 IPR011016 GO:0008270
Prci4g1888 313 Pfam RING-variant domain 58 108 IPR011016 GO:0008270
Prci4g1888 313 SUPERFAMILY RING/U-box 56 113 - -
Prci4g1888 313 CDD RING_CH-C4HC3_MARCH 58 109 - -
Prci4g1888 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 122 IPR013083 -
Prci4g1888 313 MobiDBLite consensus disorder prediction 1 49 - -
Prci4g1888 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 313 - -
Prci4g1888 313 ProSiteProfiles Zinc finger RING-CH-type profile. 50 115 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1888 Prci-Chr4 25229028 25232227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1888 1 313 C3H Transcription Factor Family AT1G11020 76.875 5.48e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1888 - - zju:107432369 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1888 4 25229028 25232227 Prci4g1888 4 25229028 25232227 ECH