Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1839 ATGGACGAAGATTTGTTGAAGCGAAACACTGATTGCGTCTATTTCTTGGCTTCCCCTCTCACTTGCAAGAAGGGAGCTGATTGTGATTATCGGCATAATGAAATTGCAAGGCTAAACCCAAGGGATTGCTGGTACTGGTTTTCTGGAAGCTGCCTTAATCCAACTTGTGCTTTCAGACATCCTCCACTGGAAGGGCATACTGGAGTGCCATCTGAACCTACACAAACTTCTTTACCTGCAAACAAGACAACTGTTCCCTGTTATTTTTTCTTTAATGGATTTTGCAATAAAGGCGACAGATGCTCATTTTTGCATGGGCCTGATTATAGTTCTTTTCCTGGTAAGGCTGGGAAGAATGACTCTGGAAGCAATGATGCACTGCCCATAGAAAATAAAACATCATCTGGAAATAAAACAGGTGTAGCATTAGCAATAACAACAACCGAAACATATCCTGATTCATCTGAAATTGCCCCAAAGGCTCTGCATAATTGTAAATTTGACCCTGATGAAGATCCTCAGCGACCAGTACTGAAAAATGTTAAACAGCAAAATAGTCCACCTGAGATGTCTGCTTATGAATATAAAGAAGCCAGTGTGATAAGGCCAGACTCTATATATCCAGAAAAGGACTTTGTTCATAGCATTTCCCATATATGCACTGATCAGAGTACAGATGAGCAAGTGAATAATCACATGGGACCTGAGGAACGATTGGAATCATCCCCTGGATTTGATGTTCTTGTTGATGATAAAATGGTGGACTCGGCCTATGAGGATGATTCTGAATATTTACCAATGCTTGATGGGGAACACAGGGAATTGAACGGGCAGTACTTGCAGTATGAATTCAAAAACACAGTCGAGTATGACCCTGAATGCTCAGAAGCTGACATTTTGTATGAAGATATGTATGATGGTTGCATTTATGGAGGTGATCATAGTCTGGCTGATGACAGAAGAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATATTGTCCAGGAAGAGGATTCGGATGCCAGCTGAAATGGCTGCTTGTGACAGGAACTTAGATCTACGGGACCATCTGACGAGACGAAGAGAAACTGATGGTCGACCTGTTACAGGCTTTTTGAGAAGACGTGAATCATCTTGTCTGGTGATTCAGAACCACGAGAGGTTTAGAAGACACGGTTTTGATCAGCAACTCAGTAGAAGGTTGACATCAGAGGTGGGATTTAGCAGCATAGACTCAAAGGGCGAGGGTGAAACTTGGCACAGGTTATGGCACCCTCTGCAACGTTCATCAAGGAAGCAGCACTTTAAAGAAAACCAAGCTCAACGACGGTTTCTTCCATCTAAAATCTTCAGGAAACCACTTTCAAAGCGGAGGTATAATCCCGCGTCTGCCACGTCTACATTTCACGGACCGAAGAGTCTAGCAGAAATTAAAGAAGAGAAGAGGACTGCTGCAAAAAAAGGGCATTTCAATAGTACTTCCACTGACTTCCAGGATCCCAAGCCTCTTAGTGAAATCCTTAAGGACAAGAAGAGGTTGGATTTTGTGTGA 1557 0.4265 MDEDLLKRNTDCVYFLASPLTCKKGADCDYRHNEIARLNPRDCWYWFSGSCLNPTCAFRHPPLEGHTGVPSEPTQTSLPANKTTVPCYFFFNGFCNKGDRCSFLHGPDYSSFPGKAGKNDSGSNDALPIENKTSSGNKTGVALAITTTETYPDSSEIAPKALHNCKFDPDEDPQRPVLKNVKQQNSPPEMSAYEYKEASVIRPDSIYPEKDFVHSISHICTDQSTDEQVNNHMGPEERLESSPGFDVLVDDKMVDSAYEDDSEYLPMLDGEHRELNGQYLQYEFKNTVEYDPECSEADILYEDMYDGCRXYGGDHSLADDRRVPAFSRERIIDSILSRKRIRMPAEMAACDRNLDLRDHLTRRRETDGRPVTGFLRRRESSCLVIQNHERFRRHGFDQQLSRRLTSEVGFSSIDSKGEGETWHRLWHPLQRSSRKQHFKENQAQRRFLPSKIFRKPLSKRRYNPASATSTFHGPKSLAEIKEEKRTAAKKGHFNSTSTDFQDPKPLSEILKDKKRLDFV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1839 519 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Prci4g1839 519 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Prci4g1839 519 Gene3D - 3 64 - -
Prci4g1839 519 Gene3D - 72 193 - -
Prci4g1839 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Prci4g1839 519 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Prci4g1839 519 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Prci4g1839 519 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Prci4g1839 519 MobiDBLite consensus disorder prediction 114 136 - -
Prci4g1839 519 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Prci4g1839 519 MobiDBLite consensus disorder prediction 476 490 - -
Prci4g1839 519 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 517 - -
Prci4g1839 519 MobiDBLite consensus disorder prediction 463 506 - -
Prci4g1839 519 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Prci4g1839 519 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Prci4g1839 519 Pfam Zinc-finger containing family 7 63 IPR041686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1839 Prci-Chr4 20490275 20494199 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci4g1839 zf-CCCH_3 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1839 - - aprc:113847503 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1839 4 20490275 20494199 Prci4g1839 4 20490275 20494199 ECH