Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1803 ATGTCCCCAGACCACTCGAATGGGGACTGCGAGTCCCTCCATGAACCCTTGCTTCATTCCGAAAGATCCAGAATCAATTCCACGTCGCAGGTTGCCATCGTTGGCGCCAATGTCTGTCCCATTGAGAGCCTTGACTACGAGATTTTCGAGAACGAGTTGTTCAAGCAGGACTGGAGGAGCCGAGGGAAGATTCAGATATTCCAGTACCTTTTCATGAAGTGGGTTTTGTGCTTGTTGATTGGCGCGATTGTTAGCCTGGTTGGATTTTGCAATAATCTTGCGGTTGAGAATATGGCTGGTCTCAAGTTCGTGATCACATCTAACTTAATGTTACAAAGGAGGTTTCTGTTGGCCTTTGCAGTATTTTTTTCTTCGAATTTGGTTCTCACGCTTTTTTCTTCTATAATCACGGCTTTTATAGCACCTGCTGCCACGGGTTCTGGTATACCAGAGGTGAAAGCCTACTTAAATGGGGTAGATGCTCCTGGAATATTTACCATCAGAACTCTGTTCGTTAAGATTATTGGAAGCATTTCAGCAGTTTCATCATCCCTTCTTATTGGAAAGGCTGGGCCTATGGTGCATACAGGTGCATGTGTGGGATCATTGTTGGGTCAGGGTGGTTCAAAGAGATATGGATTAACATGGAAATGGTTAAGTTTTTTTAAGAACGACCGAGATCGAAGGGATCTAATAACATGTGGATCAGCTGCTGGAATTGCTGCGGCCTTCCGTGCCCCAGTTGGTGGGGTGTTATTTGCTCTAGAAGAGATGGCGTCTTGGTGGAGAAGTGCCCTTCTTTGGAGAACTTTCTTCACTACAGCAGTAGTTGCACTTGTGCTTCGTGCATTAATAGATGTTTGTTTAAGCGGTAAATGTGGGTTATTTGGTAAAGGTGGGCTGATAATGTTTGATGTTTATTCAGCAAGTATTTCATATCATCTGAAGGATGTACCTCCTGCAATAATTCTTGGGGTTATAGGAGGCATACTTGGAAGCTTATATAATGCTCTGTTGAGCAGGGTTCTCCGTATCTACAACATAATCCATGAGAAAGGCATTGCATGCAAAATTTTGCTTGCTTGCTTAATCTCCATTATCACTTCTGGTCTTCTTTTTGGATTGCCATGGCTTGTTTCTTGTCAACCTTGTCCAGTTGATGCAGTTGAGGACTGTCCTACAATTGGCCGCTCTGGTAACTACAAGAAATTCCAATGCCCTCCTGGTCATTACAATGATCTTGCCAGCCTTTTTTTTAATACATGTGATGATGCTATCAGAAATCTATTTAGTGAAAACACAGATGAGGAGTTTTCATATCCATCAATTATCATCTTTTTCATCACATGCTTTTTTCTAAGCATCTTTAGCTATGGGATTGTCGCTCCAGCTGGTCTTTTTGTGCCGAATATTGTGATTGGTGCATCTTACGGGCGTTTGGTTGGGATGTTGGTTGGCAAAAATTCCACTCTTAACCATGGCCTTTATGCTGTACTTGGTGCTGCTTCTTTTGTTGGAGGATCCATGAGAATGACAGTTTCCCTATGTGTAATCTTTCTAGAACTAACAAATAATTTGTTATTGCTACCCTTGATGATGCTGGTTCTTCTGATATCTAAGACAGTAGCTGATGCTTTCAATGAAAATATGTATGACCTTATCATGAAAGCAAAGGGGTTTCCTTATTTAGAAACTCATGCTGAGCCATACATGAGACAGCTGACAGTAGGTGATGTAGTCACGGGCCCACTACAGCTCTTTAATGGCTTTGAGAAGGTTCGCAACATTGTGTTTGTTCTCAAGACTTCAAGGCACAATGGGTTCCCTGTGGTTGACGAGCCTCCATATTCGGAAGCTCCAGTTTTATTCGGTATAATCCTTCGTGGCCATCTTCTGGCATTGTTAAAGAAGAAAGATTTCTTGCCCACACCAATGGCAATGGGAGATGATGCCTTCAGTAAGTTTTCTGCAGATGACTTTGCAAAGAAGGGTTCTGACAATAGTGATGATATAGATGATATACAGTTAACTGAGGAAGAGATGGACCTGTTCATAGATCTCCATCCATTTTGTAATGCTTCACCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACCCTTTTTCGAGAAGTCGGTTTAAGGCATCTTCTGGTGATACCCAAGATCTCCAATAGATCGCCCATTGTTGGTATACTGACACGGCACGATTTCATGCCGGAACACATTTTGGATTTGCATCCTTTGTTGGCAAGAAGCAGATGGAAAAGATTAAGAATTAGGTTGCCTTTCATGGACAAAATCTTTTAA 2316 0.4227 MSPDHSNGDCESLHEPLLHSERSRINSTSQVAIVGANVCPIESLDYEIFENELFKQDWRSRGKIQIFQYLFMKWVLCLLIGAIVSLVGFCNNLAVENMAGLKFVITSNLMLQRRFLLAFAVFFSSNLVLTLFSSIITAFIAPAATGSGIPEVKAYLNGVDAPGIFTIRTLFVKIIGSISAVSSSLLIGKAGPMVHTGACVGSLLGQGGSKRYGLTWKWLSFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMASWWRSALLWRTFFTTAVVALVLRALIDVCLSGKCGLFGKGGLIMFDVYSASISYHLKDVPPAIILGVIGGILGSLYNALLSRVLRIYNIIHEKGIACKILLACLISIITSGLLFGLPWLVSCQPCPVDAVEDCPTIGRSGNYKKFQCPPGHYNDLASLFFNTCDDAIRNLFSENTDEEFSYPSIIIFFITCFFLSIFSYGIVAPAGLFVPNIVIGASYGRLVGMLVGKNSTLNHGLYAVLGAASFVGGSMRMTVSLCVIFLELTNNLLLLPLMMLVLLISKTVADAFNENMYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQLFNGFEKVRNIVFVLKTSRHNGFPVVDEPPYSEAPVLFGIILRGHLLALLKKKDFLPTPMAMGDDAFSKFSADDFAKKGSDNSDDIDDIQLTEEEMDLFIDLHPFCNASPYTVVETMSLGKALTLFREVGLRHLLVIPKISNRSPIVGILTRHDFMPEHILDLHPLLARSRWKRLRIRLPFMDKIF 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1803 771 ProSiteProfiles CBS domain profile. 687 751 IPR000644 -
Prci4g1803 771 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 Pfam CBS domain 691 740 IPR000644 -
Prci4g1803 771 SUPERFAMILY CBS-domain pair 566 741 IPR046342 -
Prci4g1803 771 Gene3D Clc chloride channel 65 563 - -
Prci4g1803 771 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1803 771 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1803 771 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1803 771 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1803 771 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1803 771 CDD CBS_pair_voltage-gated_CLC_euk_bac 566 743 - -
Prci4g1803 771 FunFam Chloride channel ClC3 65 398 - -
Prci4g1803 771 Gene3D - 564 743 IPR046342 -
Prci4g1803 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 747 - -
Prci4g1803 771 SMART cbs_1 583 636 IPR000644 -
Prci4g1803 771 SMART cbs_1 694 747 IPR000644 -
Prci4g1803 771 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1803 771 SUPERFAMILY Clc chloride channel 51 565 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1803 Prci-Chr4 18666900 18672650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1803 3 766 Ion Channels AT5G33280 76.309 0.0 1175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1803 K05016 - qsa:O6P43_002449 1233.39