Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1802 ATGTCCCCAGACCACTCGAATGGGGACTGCGAGTCCCTCCATGAACCCTTGCTTCATTCCGAAAGATCCAGAATCAATTCCACGTCGCAGGTTGCCATCGTTGGCGCCAATGTCTGTCCCATTGAGAGCCTTGACTACGAGATTTTCGAGAACGAGTTGTTCAAGCAGGACTGGAGGAGCCGAGGGAAGATTCAGATATTCCAGTACCTTTTCATGAAGTGGGTTTTGTGCTTGTTGATTGGCGCGATTGTTAGCCTGGTTGGATTTTGCAATAATCTTGCGGTTGAGAATATGGCTGGTCTCAAGTTCGTGATCACATCTAACTTAATGTTACAAAGGAGGTTTCTGTTGGCCTTTGCAGTATTTTTTTCTTCGAATTTGGTTCTCACGCTTTTTTCTTCTATAATCACGGCTTTTATAGCACCTGCTGCCACGGGTTCTGGTATACCAGAGATTATTGGAAGCATTTCAGCAGTTTCATCATCCCTTCTTATTGGAAAGGCTGGGCCTATGGTGCATACAGGTGCATGTGTGGGATCATTGTTGGGTCAGGGTGGTTCAAAGAGATATGGATTAACATGGAAATGGTTAAGTTTTTTTAAGAACGACCGAGATCGAAGGGATCTAATAACATGTGGATCAGCTGCTGGAATTGCTGCGGCCTTCCGTGCCCCAGTTGGTGGGGTGTTATTTGCTCTAGAAGAGATGGCGTCTTGGTGGAGAAGTGCCCTTCTTTGGAGAACTTTCTTCACTACAGCAGTAGTTGCACTTGTGCTTCGTGCATTAATAGATGTTTGTTTAAGCGGTAAATGTGGGTTATTTGGTAAAGGTGGGCTGATAATGTTTGATGTTTATTCAGCAAGTATTTCATATCATCTGAAGGATGTACCTCCTGCAATAATTCTTGGGGTTATAGGAGGCATACTTGGAAGCTTATATAATGCTCTGTTGAGCAGGGTTCTCCGTATCTACAACATAATCCATGAGAAAGGCATTGCATGCAAAATTTTGCTTGCTTGCTTAATCTCCATTATCACTTCTGGTCTTCTTTTTGGATTGCCATGGCTTGTTTCTTGTCAACCTTGTCCAGTTGATGCAGTTGAGGACTGTCCTACAATTGGCCGCTCTGGTAACTACAAGAAATTCCAATGCCCTCCTGGTCATTACAATGATCTTGCCAGCCTTTTTTTTAATACATGTGATGATGCTATCAGAAATCTATTTAGTGAAAACACAGATGAGGAGTTTTCATATCCATCAATTATCATCTTTTTCATCACATGCTTTTTTCTAAGCATCTTTAGCTATGGGATTGTCGCTCCAGCTGGTCTTTTTGTGCCGAATATTGTGATTGGTGCATCTTACGGGCGTTTGGTTGGGATGTTGGTTGGCAAAAATTCCACTCTTAACCATGGCCTTTATGCTGTACTTGGTGCTGCTTCTTTTGTTGGAGGATCCATGAGAATGACAGTTTCCCTATGTGTAATCTTTCTAGAACTAACAAATAATTTGTTATTGCTACCCTTGATGATGCTGGTTCTTCTGATATCTAAGACAGTAGCTGATGCTTTCAATGAAAATATGTATGACCTTATCATGAAAGCAAAGGGGTTTCCTTATTTAGAAACTCATGCTGAGCCATACATGAGACAGCTGACAGTAGGTGATGTAGTCACGGGCCCACTACAGCTCTTTAATGGCTTTGAGAAGGTTCGCAACATTGTGTTTGTTCTCAAGACTTCAAGGCACAATGGGTTCCCTGTGGTTGACGAGCCTCCATATTCGGAAGCTCCAGTTTTATTCGGTATAATCCTTCGTGGCCATCTTCTGGCATTGTTAAAGAAGAAAGATTTCTTGCCCACACCAATGGCAATGGGAGATGATGCCTTCAGTAAGTTTTCTGCAGATGACTTTGCAAAGAAGGGTTCTGACAATAGTGATGATATAGATGATATACAGTTAACTGAGGAAGAGATGGACCTGTTCATAGATCTCCATCCATTTTGTAATGCTTCACCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACCCTTTTTCGAGAAGTCGGTTTAAGGCATCTTCTGGTGATACCCAAGATCTCCAATAGATCGCCCATTGTTGGTATACTGACACGGCACGATTTCATGCCGGAACACATTTTGGATTTGCATCCTTTGTTGGCAAGAAGCAGATGGAAAAGATTAAGAATTAGGTTGCCTTTCATGGACAAAATCTTTTAA 2250 0.4231 MSPDHSNGDCESLHEPLLHSERSRINSTSQVAIVGANVCPIESLDYEIFENELFKQDWRSRGKIQIFQYLFMKWVLCLLIGAIVSLVGFCNNLAVENMAGLKFVITSNLMLQRRFLLAFAVFFSSNLVLTLFSSIITAFIAPAATGSGIPEIIGSISAVSSSLLIGKAGPMVHTGACVGSLLGQGGSKRYGLTWKWLSFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMASWWRSALLWRTFFTTAVVALVLRALIDVCLSGKCGLFGKGGLIMFDVYSASISYHLKDVPPAIILGVIGGILGSLYNALLSRVLRIYNIIHEKGIACKILLACLISIITSGLLFGLPWLVSCQPCPVDAVEDCPTIGRSGNYKKFQCPPGHYNDLASLFFNTCDDAIRNLFSENTDEEFSYPSIIIFFITCFFLSIFSYGIVAPAGLFVPNIVIGASYGRLVGMLVGKNSTLNHGLYAVLGAASFVGGSMRMTVSLCVIFLELTNNLLLLPLMMLVLLISKTVADAFNENMYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQLFNGFEKVRNIVFVLKTSRHNGFPVVDEPPYSEAPVLFGIILRGHLLALLKKKDFLPTPMAMGDDAFSKFSADDFAKKGSDNSDDIDDIQLTEEEMDLFIDLHPFCNASPYTVVETMSLGKALTLFREVGLRHLLVIPKISNRSPIVGILTRHDFMPEHILDLHPLLARSRWKRLRIRLPFMDKIF 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1802 749 PRINTS Plant CLC chloride channel signature 268 275 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1802 749 PRINTS Plant CLC chloride channel signature 392 408 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1802 749 PRINTS Plant CLC chloride channel signature 250 260 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1802 749 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1802 749 ProSiteProfiles CBS domain profile. 665 729 IPR000644 -
Prci4g1802 749 SMART cbs_1 561 614 IPR000644 -
Prci4g1802 749 SMART cbs_1 672 725 IPR000644 -
Prci4g1802 749 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 152 725 - -
Prci4g1802 749 Pfam CBS domain 669 718 IPR000644 -
Prci4g1802 749 CDD CBS_pair_voltage-gated_CLC_euk_bac 544 721 - -
Prci4g1802 749 SUPERFAMILY CBS-domain pair 544 719 IPR046342 -
Prci4g1802 749 SUPERFAMILY Clc chloride channel 51 543 IPR014743 -
Prci4g1802 749 Pfam Voltage gated chloride channel 152 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 Gene3D - 542 721 IPR046342 -
Prci4g1802 749 Gene3D Clc chloride channel 65 541 - -
Prci4g1802 749 PRINTS Chloride channel signature 490 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 PRINTS Chloride channel signature 215 234 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 PRINTS Chloride channel signature 440 460 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 PRINTS Chloride channel signature 528 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 PRINTS Chloride channel signature 472 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1802 749 PRINTS Chloride channel signature 151 170 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1802 Prci-Chr4 18666899 18672650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1802 3 744 Ion Channels AT5G33280 74.084 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1802 K05016 - qsa:O6P43_002449 1175.61