Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1801 ATGTCCCCAGACCACTCGAATGGGGACTGCGAGTCCCTCCATGAACCCTTGCTTCATTCCGAAAGATCCAGAATCAATTCCACGTCGCAGGTTGCCATCGTTGGCGCCAATGTCTGTCCCATTGAGAGCCTTGACTACGAGATTTTCGAGAACGAGTTGTTCAAGCAGGACTGGAGGAGCCGAGGGAAGATTCAGATATTCCAGTACCTTTTCATGAAGTGGGTTTTGTGCTTGTTGATTGGCGCGATTGTTAGCCTGGTTGGATTTTGCAATAATCTTGCGGTTGAGAATATGGCTGGTCTCAAGTTCGTGATCACATCTAACTTAATGTTACAAAGGAGGTTTCTGTTGGCCTTTGCAGTATTTTTTTCTTCGAATTTGGTTCTCACGCTTTTTTCTTCTATAATCACGGCTTTTATAGCACCTGCTGCCACGGGTTCTGGTATACCAGAGGTGAAAGCCTACTTAAATGGGATTATTGGAAGCATTTCAGCAGTTTCATCATCCCTTCTTATTGGAAAGGCTGGGCCTATGGTGCATACAGGTGCATGTGTGGGATCATTGTTGGGTCAGGGTGGTTCAAAGAGATATGGATTAACATGGAAATGGTTAAGTTTTTTTAAGAACGACCGAGATCGAAGGGATCTAATAACATGTGGATCAGCTGCTGGAATTGCTGCGGCCTTCCGTGCCCCAGTTGGTGGGGTGTTATTTGCTCTAGAAGAGATGGCGTCTTGGTGGAGAAGTGCCCTTCTTTGGAGAACTTTCTTCACTACAGCAGTAGTTGCACTTGTGCTTCGTGCATTAATAGATGTTTGTTTAAGCGGTAAATGTGGGTTATTTGGTAAAGGTGGGCTGATAATGTTTGATGTTTATTCAGCAAGTATTTCATATCATCTGAAGGATGTACCTCCTGCAATAATTCTTGGGGTTATAGGAGGCATACTTGGAAGCTTATATAATGCTCTGTTGAGCAGGGTTCTCCGTATCTACAACATAATCCATGAGAAAGGCATTGCATGCAAAATTTTGCTTGCTTGCTTAATCTCCATTATCACTTCTGGTCTTCTTTTTGGATTGCCATGGCTTGTTTCTTGTCAACCTTGTCCAGTTGATGCAGTTGAGGACTGTCCTACAATTGGCCGCTCTGGTAACTACAAGAAATTCCAATGCCCTCCTGGTCATTACAATGATCTTGCCAGCCTTTTTTTTAATACATGTGATGATGCTATCAGAAATCTATTTAGTGAAAACACAGATGAGGAGTTTTCATATCCATCAATTATCATCTTTTTCATCACATGCTTTTTTCTAAGCATCTTTAGCTATGGGATTGTCGCTCCAGCTGGTCTTTTTGTGCCGAATATTGTGATTGGTGCATCTTACGGGCGTTTGGTTGGGATGTTGGTTGGCAAAAATTCCACTCTTAACCATGGCCTTTATGCTGTACTTGGTGCTGCTTCTTTTGTTGGAGGATCCATGAGAATGACAGTTTCCCTATGTGTAATCTTTCTAGAACTAACAAATAATTTGTTATTGCTACCCTTGATGATGCTGGTTCTTCTGATATCTAAGACAGTAGCTGATGCTTTCAATGAAAATATGTATGACCTTATCATGAAAGCAAAGGGGTTTCCTTATTTAGAAACTCATGCTGAGCCATACATGAGACAGCTGACAGTAGGTGATGTAGTCACGGGCCCACTACAGCTCTTTAATGGCTTTGAGAAGGTTCGCAACATTGTGTTTGTTCTCAAGACTTCAAGGCACAATGGGTTCCCTGTGGTTGACGAGCCTCCATATTCGGAAGCTCCAGTTTTATTCGGTATAATCCTTCGTGGCCATCTTCTGGCATTGTTAAAGAAGAAAGATTTCTTGCCCACACCAATGGCAATGGGAGATGATGCCTTCAGTAAGTTTTCTGCAGATGACTTTGCAAAGAAGGGTTCTGACAATAGTGATGATATAGATGATATACAGTTAACTGAGGAAGAGATGGACCTGTTCATAGATCTCCATCCATTTTGTAATGCTTCACCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACCCTTTTTCGAGAAGTCGGTTTAAGGCATCTTCTGGTGATACCCAAGATCTCCAATAGATCGCCCATTGTTGGTATACTGACACGGCACGATTTCATGCCGGAACACATTTTGGATTTGCATCCTTTGTTGGCAAGAAGCAGATGGAAAAGATTAAGAATTAGGTTGCCTTTCATGGACAAAATCTTTTAA 2271 0.4232 MSPDHSNGDCESLHEPLLHSERSRINSTSQVAIVGANVCPIESLDYEIFENELFKQDWRSRGKIQIFQYLFMKWVLCLLIGAIVSLVGFCNNLAVENMAGLKFVITSNLMLQRRFLLAFAVFFSSNLVLTLFSSIITAFIAPAATGSGIPEVKAYLNGIIGSISAVSSSLLIGKAGPMVHTGACVGSLLGQGGSKRYGLTWKWLSFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMASWWRSALLWRTFFTTAVVALVLRALIDVCLSGKCGLFGKGGLIMFDVYSASISYHLKDVPPAIILGVIGGILGSLYNALLSRVLRIYNIIHEKGIACKILLACLISIITSGLLFGLPWLVSCQPCPVDAVEDCPTIGRSGNYKKFQCPPGHYNDLASLFFNTCDDAIRNLFSENTDEEFSYPSIIIFFITCFFLSIFSYGIVAPAGLFVPNIVIGASYGRLVGMLVGKNSTLNHGLYAVLGAASFVGGSMRMTVSLCVIFLELTNNLLLLPLMMLVLLISKTVADAFNENMYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQLFNGFEKVRNIVFVLKTSRHNGFPVVDEPPYSEAPVLFGIILRGHLLALLKKKDFLPTPMAMGDDAFSKFSADDFAKKGSDNSDDIDDIQLTEEEMDLFIDLHPFCNASPYTVVETMSLGKALTLFREVGLRHLLVIPKISNRSPIVGILTRHDFMPEHILDLHPLLARSRWKRLRIRLPFMDKIF 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1801 756 Gene3D Clc chloride channel 65 548 - -
Prci4g1801 756 SUPERFAMILY Clc chloride channel 51 550 IPR014743 -
Prci4g1801 756 SUPERFAMILY CBS-domain pair 551 726 IPR046342 -
Prci4g1801 756 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 732 - -
Prci4g1801 756 ProSiteProfiles CBS domain profile. 672 736 IPR000644 -
Prci4g1801 756 SMART cbs_1 568 621 IPR000644 -
Prci4g1801 756 SMART cbs_1 679 732 IPR000644 -
Prci4g1801 756 Pfam Voltage gated chloride channel 130 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Plant CLC chloride channel signature 399 415 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1801 756 PRINTS Plant CLC chloride channel signature 243 251 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1801 756 PRINTS Plant CLC chloride channel signature 257 267 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1801 756 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1801 756 PRINTS Plant CLC chloride channel signature 275 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci4g1801 756 Gene3D - 549 728 IPR046342 -
Prci4g1801 756 CDD CBS_pair_voltage-gated_CLC_euk_bac 551 728 - -
Prci4g1801 756 PRINTS Chloride channel signature 479 495 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Chloride channel signature 222 241 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Chloride channel signature 447 467 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Chloride channel signature 497 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 PRINTS Chloride channel signature 535 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci4g1801 756 FunFam Chloride channel ClC3 65 377 - -
Prci4g1801 756 Pfam CBS domain 676 725 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1801 Prci-Chr4 18666899 18672650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1801 3 751 Ion Channels AT5G33280 75.000 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1801 K05016 - qsa:O6P43_002449 1187.56