Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1779 ATGGATTACCAGGCCACTTTTGAGTCCGACATTGTTCTTCTACAGTCAGTCGAGAGCTACCTTCTTGATGACGACTCCAATGCTCTCATTGCATTTCCAGCCACATTCGCCGGCAACGCTCCTGTTTGCCTTCAGAGTTCTAGCGGCGGGATGGCGGCAAACAGCGATGGCGAGATTAGCTCTCCGTCTTTCTCGTCGGAACAAGCTAACATTGAGGTTTTCTGTGCAGATGCAGCGGGAGTGAGGCGGAGGCCGTGGGGCAAATACGCGGCGGAGATTAGAGAGCCAAAGAAGAACGGCGCGAGAGTGTGGCTTGGGACTTACGAGGCTGCTGAGGGCGCGGCTTTGGCTTACGATCGAGCCGCTTTCAAGATGCGTGGCTCCAAAGCCAAGCTGAATTTTCCTCATCTTATTGGCTCGAACATGTCGGAGCCACCAAGCGTGACTGGAAAGCGGCGGCTGCCGGAGTTTAGAGGAGGCATCAATGAAAATGAAGAGGGGAAAGAGCCGAGCGAACATGCTGAAGTGGGATACATACATGTGAGCCAAGTGATGGAAGCCAAGCCGTGGAGTTGGGTTGGGGATGGGTTCTAA 594 0.5404 MDYQATFESDIVLLQSVESYLLDDDSNALIAFPATFAGNAPVCLQSSSGGMAANSDGEISSPSFSSEQANIEVFCADAAGVRRRPWGKYAAEIREPKKNGARVWLGTYEAAEGAALAYDRAAFKMRGSKAKLNFPHLIGSNMSEPPSVTGKRRLPEFRGGINENEEGKEPSEHAEVGYIHVSQVMEAKPWSWVGDGF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1779 197 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Prci4g1779 197 PANTHER DNA-BINDING DOMAIN 70 153 IPR044808 GO:0003700|GO:0009873
Prci4g1779 197 FunFam Ethylene-responsive transcription factor 2 78 136 - -
Prci4g1779 197 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Prci4g1779 197 MobiDBLite consensus disorder prediction 156 172 - -
Prci4g1779 197 MobiDBLite consensus disorder prediction 143 172 - -
Prci4g1779 197 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Prci4g1779 197 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Prci4g1779 197 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Prci4g1779 197 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Prci4g1779 197 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Prci4g1779 197 Pfam AP2 domain 80 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1779 Prci-Chr4 18140303 18140937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1779 80 156 AP2-EREBP Transcription Factor Family AT2G44840 76.623 7.72e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci4g1779 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1779 K09286 - qsa:O6P43_026942 161.384