Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1752 ATGGGGAAGAAAAAGGAACAAGTGGGAGATAAATCAAGCGAGGATGGTGGGAGTCAAAGCAAAGTTGGAGATAGTAGCCCCAAAGCATATGACAAGGATACTATGGTGTTCATATCCATGGCTCAAGATTTAAAGGATGAGGGGAACAAGCTATTCCAAAAGAGGGACCATGAAGGGGCCTTGATAAAATATGAGAAAGCTCTCAAGTTGCTTCCAAAGAATCATATAGATGTGTCGTATCTACGGAGTAACATGGCAGCATGCTACATGCAGATGGGACTTGGTGAGTACTCCAGGGCAATTGATGAATGCAATTTAGCCCTTGAGGCTACACCAAAATACAGTAAGGCACTGTTGAAGAGGGCAAGGTGCTATGAAGGTTTAAATAGACCGGATTTAGCTTTGACAGATGTTAGTACCGTTTTGAAGATGGAACCAAATAATATCATGGCATTGGAGATCTCTGAAAGGGTTAAACAAACACTTGAGGAGAAAGGATTGAGAGTGAATGATACAGTGATCGAGTTGCCTCCAGATTATGTTGAACCTTCTTATGCTTTAATTCCAGAAAAAGTGGTGAAAGAGAAGATACGCAAAAAGAAGAGCAACAAAGTTGAGGTGAATGCTGTGGATAATAAAACTGTAGTAAAACAAGCTGAGGAGAAATTGGAAGAGAAGAAGGTTGAGGACAATATTGAGAAGGCTGGGAGGAAATCTAAAAGGAAGGCGAAGGAAAAAATTGATGAGAAGAAGGCCGATGTTAAGGAGGTTGTGGAGGAAACAATTAATGGTAGAAGAGATGATATGCTGAAGAAAACAGCAAAACTTGTTTTTGGTGAGGACATAAGATGGGCTGAGTTGCCAATTAATTGCAGCCTTTTGCAGCTAAGAGAAGTTATCTGTGACCGCTTCCCAAGCCTAGGAGCAGTTCTTGTCAAGTATAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATTCTGAATTAAGATGGGCTGAAACTTCAGCAGGATCACAAGGTTCAATCCGGCTATACATTGTAGAAGCTACTCCTGAGCAGGATCCATTCTTCGAGAAAATTAATAAAATGGAGGTGCAAAAGCCTCCTGTTAGTAAAGCACCTGAGAATCGTTGTGTTTTGAAAGAAAACGAAGTGATAAACTCATCTTGCATCGAGGATTGGACAATCCGGTTTGCCCAGCTATTCAAGAACCATGTTGGATTCGAATCTGACAGATATTTGAATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTATGGAGGAGACTGTTACAAGTGAAGAAGCACAAGGTTTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACAGCGCTAGCACTGTTCAGCTGGGGAAATGTTCACATGTCTAGGGCAAGGAAGAAAGTGTATTTCACTGAAGATTCTTCTAAGAAGCATCTGTATGAACAAATCGAAAGTGCATATGACTGGGCACAGAATGAATATAAAAAGGCAGCAGAAAAATATGAAGCTGCCATTCAAATAAAATCAGATTTTTATGAAGGCTTTCTGGCGCTGGGGCAGCAACAATTTGAGCGAGCAAAACTTTCTTGGTATTATAATGGAATCAGCAGTGGTGCTGATTCAGCGACATGGCCTTCTGCTCATGTTCTTCAGCTTTACAGCAATGCTGAAGATAATATGGAAAAAGGAATGCAATTATGGGAACAGTCAGAGGAGCATCGCTTGATTGAAGCCTCCAAATCCAAGGATATCAAATTACTTTTGCATGAGATGGGATTGGATGGCATGTTGAAAAATATATCGGCGGATGAAATTGCTGCACAGGCTGCAAATATGAGATCTCAGATAAATCTGCTGTGGAGTACCATGCTATATGAGCGTTCAATTGTGGAATTCAAAGTAGGGTTACCAGAATGGCATGAATCTCTGGAAGTAGCTGTCAAGAAGTTTAAACTTGCTGGAGCTTCTCCAACAGATATGGCCGTGATGTTGAAGAACCACTGTTCAAATAATAGTGCTGCAGATGGTCTAGAGTTCAAAATGGATGAAATAGTACAAGCATGGAATGGGATGTATGAAGCTAAAAAGTGGCAGCATGGAGTTCCTTCCTTTCGCTTGGAAACCTTATTTAGGAGGCGAGTTTCAAAACTTTATCGTGCCTTGGAGCTTGTGTGA 2187 0.4106 MGKKKEQVGDKSSEDGGSQSKVGDSSPKAYDKDTMVFISMAQDLKDEGNKLFQKRDHEGALIKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLGEYSRAIDECNLALEATPKYSKALLKRARCYEGLNRPDLALTDVSTVLKMEPNNIMALEISERVKQTLEEKGLRVNDTVIELPPDYVEPSYALIPEKVVKEKIRKKKSNKVEVNAVDNKTVVKQAEEKLEEKKVEDNIEKAGRKSKRKAKEKIDEKKADVKEVVEETINGRRDDMLKKTAKLVFGEDIRWAELPINCSLLQLREVICDRFPSLGAVLVKYRDQEGDLVTITSDSELRWAETSAGSQGSIRLYIVEATPEQDPFFEKINKMEVQKPPVSKAPENRCVLKENEVINSSCIEDWTIRFAQLFKNHVGFESDRYLNFHELGMKLYSEAMEETVTSEEAQGLFDMAGDKFQEMTALALFSWGNVHMSRARKKVYFTEDSSKKHLYEQIESAYDWAQNEYKKAAEKYEAAIQIKSDFYEGFLALGQQQFERAKLSWYYNGISSGADSATWPSAHVLQLYSNAEDNMEKGMQLWEQSEEHRLIEASKSKDIKLLLHEMGLDGMLKNISADEIAAQAANMRSQINLLWSTMLYERSIVEFKVGLPEWHESLEVAVKKFKLAGASPTDMAVMLKNHCSNNSAADGLEFKMDEIVQAWNGMYEAKKWQHGVPSFRLETLFRRRVSKLYRALELV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1752 728 SMART tpr_5 41 74 IPR019734 GO:0005515
Prci4g1752 728 SMART tpr_5 115 148 IPR019734 GO:0005515
Prci4g1752 728 SMART tpr_5 79 114 IPR019734 GO:0005515
Prci4g1752 728 SMART PB1_new 271 350 IPR000270 GO:0005515
Prci4g1752 728 Pfam PB1 domain 273 349 IPR000270 GO:0005515
Prci4g1752 728 MobiDBLite consensus disorder prediction 1 29 - -
Prci4g1752 728 ProSiteProfiles PB1 domain profile. 271 350 IPR000270 GO:0005515
Prci4g1752 728 SUPERFAMILY TPR-like 41 528 IPR011990 GO:0005515
Prci4g1752 728 Gene3D - 273 350 - -
Prci4g1752 728 SUPERFAMILY CAD & PB1 domains 268 361 - -
Prci4g1752 728 CDD PB1 279 347 - -
Prci4g1752 728 Gene3D Tetratricopeptide repeat domain 35 187 IPR011990 GO:0005515
Prci4g1752 728 PANTHER PROTEIN CLMP1 3 726 IPR044517 -
Prci4g1752 728 Coils Coil 240 260 - -
Prci4g1752 728 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Prci4g1752 728 Coils Coil 484 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1752 Prci-Chr4 17468971 17473693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1752 24 164 Calmodulin-binding Proteins AT3G25230 30.323 1.34e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1752 K26538 - gmx:100778972 1030.39