Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1725 ATGGCTGAACAAACTGAGAAGGCTTTTCTCAAGCAACCAAGAGTGTTTCTAAGCTCGAAGAAATCTGGGAAGGGAAAGAGGCCTGGAAAAGGAGGGAATCGCTTTTGGAAGTCTATTGGTCTTGGCTTCAAGACTCCCAGGGAAGCTATTGAAGGAACCTACATTGATAAGAAGTGCCCCTTCACCGGTACTGTTTCTATCAGGGGTCGTATCCTAGCTGGCACTTGTCATAGTGCTAAGATGACAAGAACTATTATTGTTAGAAGGAACTATCTTCACTTTGTCAAGAAGTACCAGAGATATGAGAAGAGGCACTCAAACATTGCTGCTCACATATCACCTTGCTTTCGTGTAAAGGAGGGAGATCATGTTATTATTGGCCAGTGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTAAAAGTGATTCCAGCTGGATCTTCCAGTGGTGTGAAGAAGGCATTCACGGGCATGTGA 480 0.4458 MAEQTEKAFLKQPRVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGVKKAFTGM 159
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1725 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 FunFam 40S ribosomal protein S11 1 158 - -
Prci4g1725 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Prci4g1725 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Prci4g1725 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Prci4g1725 159 NCBIfam 30S ribosomal protein S17 54 143 IPR028333 -
Prci4g1725 159 Gene3D - 1 158 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci4g1725 Prci-Chr4 16392460 16394504 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1725 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 91.195 6.55e-98 277
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1725 K02949 - cit:102609988 301.597