Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1724 ATGTGTGTGCAGGAGCAGGACGCCGAGCAAGGTGGTGAAGAAGATATGGAGACCCATGAGAGCAGAAGGAAGACATGGCCTTTGCATTGTGATTTCTTGCGTGCCCAGATGGAGGACTGGGAAAAGGAGCCTCCTTTCACAACTTCCAGTGTTGGGAATTCATTTCCTCTGGAAAGCATAAGTGAGGATACAGTGATTGGAGACAAAAAGCAGACATTGATGAACTTTGTCCCTGTTCTTCGGTCCGGCGAGTGTTCAGATATTGGAGGTCGTCCTTCTATGGAGGACACCCACATATGTGTTGGAGACATGGTCAAGGAGTTTGGGTATAAAGTTATCCGTGAGGAAGTAGTTTCCTTTTATGGAGTATTTGATGGACATGGAGGTGAGGGTGCTGCAAAATTTGTCCGAGATTATCTGCCGAGAGTGATTGCAGAAGATGCTGATTTTCCCTTGGAGATGGAGAAGGTAGTCACAAGGTCATTCTTGAAGACTGATGCTGCATTTGCAGAGTCTTGTTCTCTTGAGTCTTCCATGTCTTCTGGTACAACTGCACTAACCGCCATTGTACATGGCAGGTCTTTGCTTGTTGCCAATGCCGGGGACTGCCGGGCAGTGTTGTCCCGATGTGGAGGGGCTATAGAAATGTCCAAAGATCACAGACCCTTGTGTAATACAGAAAGGAAGAGGATTGAATCCTTAGGTGGTTCTATATATGATGGTTACCTGAATGGCGAACTCAGTGTGACTCGTGCTCTAGGCGACTGGCACCTTGAAGGAATGAAGAAAATGAGTGAAAGAGGACAAGGAGGGCCACTGACGGCTGAGCCAGAACTTAAACTGATGACATTAAACAAAGAAGATGAGTTCTTAATACTTGGGAGTGATGGAATCTGGGATGCATTCACTAGCCAAAATGCAGTTGATTTTGCTAGGAGACGGCTTCAAAAGCACAATGACGTGAAAATATGCTGCCAGGAAATGGTAGAGGAGGCCGTTAAGAGAGGATCAATAGACAACTTAACTGTTGTGATGGTATGTTTTCACTCAGATCCGCCGCCACCCATGGTGGTAGAAAGGGTTAGAGTCAGGAGCAGCATTTCAGCTGAGGGACTTCAGAATCTAAGATCTCTGTTGGAAGGATAG 1146 0.4642 MCVQEQDAEQGGEEDMETHESRRKTWPLHCDFLRAQMEDWEKEPPFTTSSVGNSFPLESISEDTVIGDKKQTLMNFVPVLRSGECSDIGGRPSMEDTHICVGDMVKEFGYKVIREEVVSFYGVFDGHGGEGAAKFVRDYLPRVIAEDADFPLEMEKVVTRSFLKTDAAFAESCSLESSMSSGTTALTAIVHGRSLLVANAGDCRAVLSRCGGAIEMSKDHRPLCNTERKRIESLGGSIYDGYLNGELSVTRALGDWHLEGMKKMSERGQGGPLTAEPELKLMTLNKEDEFLILGSDGIWDAFTSQNAVDFARRRLQKHNDVKICCQEMVEEAVKRGSIDNLTVVMVCFHSDPPPPMVVERVRVRSSISAEGLQNLRSLLEG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1724 381 PANTHER PROTEIN PHOSPHATASE 2C 68 346 IPR015655 GO:0004722|GO:0006470
Prci4g1724 381 ProSiteProfiles PPM-type phosphatase domain profile. 81 348 IPR001932 -
Prci4g1724 381 Pfam Protein phosphatase 2C 89 340 IPR001932 -
Prci4g1724 381 CDD PP2Cc 81 348 IPR001932 -
Prci4g1724 381 Gene3D - 67 351 IPR036457 -
Prci4g1724 381 SMART PP2C_SIG_2 96 348 IPR001932 -
Prci4g1724 381 SMART PP2C_4 71 346 IPR001932 -
Prci4g1724 381 MobiDBLite consensus disorder prediction 1 22 - -
Prci4g1724 381 SUPERFAMILY PP2C-like 72 349 IPR036457 -
Prci4g1724 381 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Prci4g1724 381 FunFam Probable protein phosphatase 2C 22 65 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1724 Prci-Chr4 16352072 16356572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1724 76 381 PP2C-type Phosphatase Gene Family AT2G25620 59.477 4.23e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Prci4g1724 PP2C 4.3e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1724 K14803 - gmx:100782648 543.117