Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1720 ATGGCTGGCATGCTTCCCGGAGTTGAATCAGCTCGAAGGAGACGCTTCCATCAGACCGGGCCATCCTCTGATTGCCCTCATTTCACCAGACGACCTTCCTTGTGCTTATATTCAAGCAACCACGAATTCCTTCATTTCTCTTCTTCTCTGCAGCAAAGAAACGTATTATATCAGGCGCGAACAGATGAGAAGCTGGCAGGAGCTGCCGGAGAAGCCAAAGAAAGATTGGATGAGAGATTAAGATCAGCTCAAAAGAAATCACTTAACAAAAGGAAAAACATCAAAGAGAAGGAGAAATGCAGAGAAGGAAGACCAGAGTTACACATAGAGGTATACGGATCAAAGAAAAGTGGTGGGTCAAGGATGATGTTCAATTGGAGGAAACTGAGCTGGAAGGCTTCAGATCAAGAGGATTGTGCTGTGTGCTTGGAGTCATTCAAGATTGGAGAGACACTGACCCATCTTCCTTGTGCTCACAGGTTTCATTGCAGCTGCTTGGAGCCATGGCTGCAAAATAACAATTATTGCCCATGTTGCAGAACTTCCATTGTCATCTCTCACTAG 564 0.4539 MAGMLPGVESARRRRFHQTGPSSDCPHFTRRPSLCLYSSNHEFLHFSSSLQQRNVLYQARTDEKLAGAAGEAKERLDERLRSAQKKSLNKRKNIKEKEKCREGRPELHIEVYGSKKSGGSRMMFNWRKLSWKASDQEDCAVCLESFKIGETLTHLPCAHRFHCSCLEPWLQNNNYCPCCRTSIVISH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1720 187 Coils Coil 73 93 - -
Prci4g1720 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Prci4g1720 187 CDD RING-H2_PA-TM-RING 138 180 - -
Prci4g1720 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 48 181 - -
Prci4g1720 187 FunFam Zinc finger family protein 111 185 - -
Prci4g1720 187 SMART ring_2 139 179 IPR001841 -
Prci4g1720 187 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Prci4g1720 187 SUPERFAMILY RING/U-box 127 185 - -
Prci4g1720 187 MobiDBLite consensus disorder prediction 1 25 - -
Prci4g1720 187 Pfam Ring finger domain 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1720 Prci-Chr4 16318664 16320605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1720 1 93 C3H Transcription Factor Family AT2G15580 44.860 1.91e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1720 - - tcc:18588906 232.261