Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1700 ATGCTAGATGCGAAGAGGTTATCTCCTCAAAGCCGCAGAACACTTTCGATTCTCGTGCCATCATCCGTTTCGGTCACACTAGCCTCCACACATTCTCTGGGCATGAGGCTTTTGTGCTCCAAACCTCCGATAATGCCGGGTGTGGAAGCCTCTGGCACAGTCGATTCCTCGGACTCATCTTCGTCTTCAAGTCTTTCTGATCATTTGCTGTCTTTATCTCTCAATGGAGTGCATAAACAGACGGAGTCGGTTTCCGAAGACCAATTTGTGAAAAAAGATCCTCGGGAAATTGCCAGGGAGTATCAATTGGAATTATGCAAGAAAGCTCTGAAGGAAAATATAATTGTGTATCTGGGGACAGGTTGTGGGAAGACTCACATCGCTGTGTTGCTTATGTATGAGATGGGGCACTTGATACGGAAGCCTCAGAAGAACGTATGTGTTTTTCTTGCCCCTACAGTGGCATTAGTTAACCAGCAAGCAGATGTGATAGAAGAGTCTACGGATTTTAAGGTTGGGGTTTACCGTGGGAGCTCAAAGCGCTTGAAAAAACATCAAGATTGGATGCAAGAGATCGAGCAACATGAGGTTCTTGTTATGACCCCTCAGATACTTTTGCGCGGTTTATCTCACACTTTCATAAAAATGGAGATGATTTCTCTTTTAATATTTGATGAATGCCATCATGCCCAAGTCAAAAGCAACCATCCATATGCAGAAATCATGAAAGTCTTCTATGAACGGGAATCCAGTAAGATTCCCCGCATCTTTGGCATGACAGCTTCGCCAGTTGTAGGGAAAGGTGCTTCTAGTAAAGGAAATCTATCAAGGAGCATCAATAGTCTCGAACGTTTGCTTGACTCAAAGGTATATTCGGTCTCGCAGAAAGAAGTGGATACTTTTGTGGCCCCTCCTGTAGTTACTATATATTATTATGGTCGTAGTGCCAATGAACCATTGTACACGAATTACTGTACCAAGCTATGGGAGATTAAATGTCAGTGCATAGAAATCCTTAGAAGCAGTACAGAATATCACTTGAAACGGAGGAACACAAAGAAACTTCTGAACCGAATGCATAATAATGTGCTTTTCTGTCTGGAGAATCTTGGCGTTTGTGGAGTATTGCAAGCTAGTCGTGTTCTTTTGAGTGGTGATCACTCTGAAAGGCTTGAATTTGTGGAGGAGGAAGGAAGTGCAAGTGAATACTCTTTTTGTGACAAATATCTAGCACGGGTGTCTGAGTTCTTTATTTCTGAATGCATGAAAGGTGACCATTTGTCTGATCTCTCTTCTCTGGACAATTTAAAAGAGCCTCTTTTCTCAAGAAAGCTTTTACGCCTCATTGGGATACTGTCCTCATTTAGGCCACAACCAGATATGAAATGTATAATTTTTGTAAATAGAATTGTTACTGCAAGATCCCTGTCATACATACTACAACAGCTCAAAATTTTAGCACGTTGGAAAAGTGATTTTCTGGTAGGAGTTCATGCTGGAATAAAAAGTTCATCGAGAAAGACTATGAGCATCATTCTTGACAAGTTCCGCAGTGGAGAGTTGAATTTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCTGAAACTGTTGCGAGCTTTATACAATCAAGAGGTCGTGCACGTATGGCTAAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGATATGGACTTGATTGAATGTTTTAAGGAAGATGAAAACCGTATGAACAAGGAAGTTGCTTTCCGCACATCCTATGATACACATATCATCCCTGAGGAAAGAATTTACAAAGTCATATCAACTGGCGCTTCTGTCACTTCTGCATATAGTGTCTCATTGCTTCACAACTATTGTTCGAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAGAATTTTTTTACTTTGATGATTTAGGGGGAACTGTCTGTCACGTAACATTGCCTTCCAATGCTCCCATACATCAAATTGTTAGTGCACCACATGGTTCAATGGAAGCTGCTAAGAAGGCTGCTTGTTTGCAAGCGGTTGAGGAACTGCATAAATTAGGTGCTTTGAGTGATTGTCTGTTGCCAAGGCAAGATGAGGCAAACCCAGAGGAGGTTTCAGATTCTTCTGATTCAGATGAAAATGAAGATGACAACTCACGAGGAGAATTATATGAGATGCTAGTTCCTTCAGCCTTTAGGCAGGCCTGGTCACATTCAGATGATATTGTCCATCTTAACTCTTACCTTTTAAAATTTAGACCCTCTCCAGAGGATCGGATCTATAAAGAGTTTGGTTTATTTATGATGACACGTCTTCCTGCGGAGGCTGTGAAATTGGAAATTGATCTTCATCTTGCTCGTGGTAGAACTGTGATGACACGATTTGTTCCATTTGGTGCTATTGAATTTGACAAAGCTGAGATTCAGATGGCACAGCATTTTCAGGAGATGTCCCTAAAAATTATTCTTGATCGATCAGAATTTGTTCATGAATTTGTACCCTTGGGTAGTTCTGATGTCTTGCAAACAAGCACCTCAACCTTCTATCTTGTGCTTCCAGTAATAATGCAAGACTGTGAAAGGACTATGTCAGTAGATTGGAAGACCGTGAAAAGATGCCTTTCTTCACCCATTTTTAGGCCTCCAGGTCAACCTGTAACTCCAAAATTGTTTCCTTGGAGAGGGAACCTGCAACTTGCTGATGGTTGGAAAAGTGTAAGCGATATTGAGAATAGTTTAGTATATGCCCCACACAAGAAGCTGTTTTATTTTATTACTGAGATTGTTTATGAAAAGGATGCACTGAGTCCTTATAAGGATTTGGGCAGTTCAAGCTATGCGGACCACTTTATTAAAAGGTTTTCCATTCATCTTAAATACCCCAAGCAACCGCTTCTCTGTGCAAAGCCACTATTTAATTTGCACAACTTGCTTCACAACCGAAAGCAAGAGGATACAGAAACTCAGGAACTGGAGGAGTATTTCATCTATTTGCCTCCTGAGCTTTGTGAACTAAAAATTATAGGCTTCTCTAAAGATATTGGTAGTTCCCTGTCTTTGGTACCATCCATCATGCATCGTCTTGGAAACTTGCTGGTTGCAATTGAACTCAAGCATCTGCTACGTTCTTCTTTCTCTGAGGCAGATGAAGTCAGTGCAGAAAGAGTTTTGGAGGCACTCACCACTGAGAAATGTCAGGAGCGCCTTTCTCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCAGTTGCACGCCATTTTTTCCTCATGAATGATAGCCTTCATGAAGGAGACCTTACAAGGAGGCGATCAAATGTTGTAAATAACTCCAATTTGTTCAAGTTAGCTACTAAACGGAATCTGCAGGTGTACATTCGCGATCAGGCATTTGATCCTTCTCAGTTCTTTGCATTGGGCCATCCTTGCCTAAGAGTTTGTACCCCGGAAACTGAAGAAAGCATTCACTCCTGTTTAAATTCTCCAGAGGAGCAGGGAAGATCATCTGAAGTTCGTTGCAATAAAAATCACCACTGGCTTTATCGGAAAACAGTTGCTGATGTCATTGAAGCTCTTATTGGAGCATTCATAATTGACAGTGGCTTTAAAGCAGCCACTGCATTTCTTACATATCTTGGCATACAAGTTAAGTTTGAATCCTTACAGGTAGTCAATGCTTGCAAAGCAAGTATGGGTTACATCCCCCTTTCCATGCATATAGACATTCCTTCCCTTGAAGATGAGTTAAAGTATCACTTTGTCCATAAGGGTTTACTTCTCCAAGCATTTGTACATCCTTCTTACAATAAGCATGGGGGTGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATACCTTTACTCCGCTTATCCACAGCTAAAGCCTGGTCAATTAACAGACCTGAGATCAGTGTCAGTTAACAATAAGGCTTTTGCCTATGTCGCAGTGGGTAAAGGATTTCATAATTTCCTTTTATGTGATTCTCATGGTCTGTCTGATGCAATAGAAAAGTATGTGGACTACATTAAAGGATCTAAAGCGCATTCTGGTGTTCATGGAGGGCCAAAATGTCCCAAGGCCCTAGGTGACTTGGTAGAGTCTTGTGTTGGTGCCATTCTGGTTGATTCTGGTTTCAATCTGAACAGTGTTTGGAAGATTATGACTTCATTCTTGGAGAACATAATGAAATTTTCGTCAGGCTTGCAGCTTAGTCCTATTAGGGACTTGCAAGAACTTTGCCAATCTCATAGTTTGGACTTGCAGTTTCTGAAATCCAAAACAAGCAGAATGTTTTCTGTTGAAGCCAAGGTGACTGGGAAAGATGTATCTGAAACTGCTTCAGCAACCAGCATGAACCAAAAAGAGGCTTCTAGAATTGCTTCACAACTAGTATTTTCTGAATTAAAGTCTAAGGGCTGGAAACCGAAGTCAAAATCTTTGGAGGAAGTTCTTAAGTCAACTTTTAAAGCAGAAGGCAAACTTCTTGGTTATGATGAAACACCCATTGATATAACTGAAGCTGGCATCGAGCCTGTAATGGTTGAGGGAGACCAATGCAGCAGTTTTGATCCAGAAATTTTTCGCATCTGTGATGATGAGGTAGTTGACGGATACCCCCCACATTCAACATCTGTTAGGCAGCAGGTTCCATCTTCTTCCGTCACAGGGAAACTTGGGGAGGAAATTGAAGATCACGAACGGGACTGTGACTCACAGAGGGCACGTATGTTAGAATGTGTGGTCAAAGGAACATCAAGATCGCGGTTATATGAATTCTGTGCTGCCAATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAAGTGGAGGGACCAGACCATCTGAAGTTATTTACTTGCAAGGTGACCTTGGAGATAGAAGATGCTTCAAATATGATTTTGGAGTGTGTTGGAACTCCTCAATCAAGGAAGAAAGAAGCAGCAGAGGCTGCAGCTGAGGGCGCATTTTGGTACCTGGAAAAGGAAGGTCACTTACTTTGA 5076 0.4147 MLDAKRLSPQSRRTLSILVPSSVSVTLASTHSLGMRLLCSKPPIMPGVEASGTVDSSDSSSSSSLSDHLLSLSLNGVHKQTESVSEDQFVKKDPREIAREYQLELCKKALKENIIVYLGTGCGKTHIAVLLMYEMGHLIRKPQKNVCVFLAPTVALVNQQADVIEESTDFKVGVYRGSSKRLKKHQDWMQEIEQHEVLVMTPQILLRGLSHTFIKMEMISLLIFDECHHAQVKSNHPYAEIMKVFYERESSKIPRIFGMTASPVVGKGASSKGNLSRSINSLERLLDSKVYSVSQKEVDTFVAPPVVTIYYYGRSANEPLYTNYCTKLWEIKCQCIEILRSSTEYHLKRRNTKKLLNRMHNNVLFCLENLGVCGVLQASRVLLSGDHSERLEFVEEEGSASEYSFCDKYLARVSEFFISECMKGDHLSDLSSLDNLKEPLFSRKLLRLIGILSSFRPQPDMKCIIFVNRIVTARSLSYILQQLKILARWKSDFLVGVHAGIKSSSRKTMSIILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMAKSEYAFLVDSGNKKDMDLIECFKEDENRMNKEVAFRTSYDTHIIPEERIYKVISTGASVTSAYSVSLLHNYCSKLPHDEYFDPKPEFFYFDDLGGTVCHVTLPSNAPIHQIVSAPHGSMEAAKKAACLQAVEELHKLGALSDCLLPRQDEANPEEVSDSSDSDENEDDNSRGELYEMLVPSAFRQAWSHSDDIVHLNSYLLKFRPSPEDRIYKEFGLFMMTRLPAEAVKLEIDLHLARGRTVMTRFVPFGAIEFDKAEIQMAQHFQEMSLKIILDRSEFVHEFVPLGSSDVLQTSTSTFYLVLPVIMQDCERTMSVDWKTVKRCLSSPIFRPPGQPVTPKLFPWRGNLQLADGWKSVSDIENSLVYAPHKKLFYFITEIVYEKDALSPYKDLGSSSYADHFIKRFSIHLKYPKQPLLCAKPLFNLHNLLHNRKQEDTETQELEEYFIYLPPELCELKIIGFSKDIGSSLSLVPSIMHRLGNLLVAIELKHLLRSSFSEADEVSAERVLEALTTEKCQERLSLERLEVLGDAFLKFAVARHFFLMNDSLHEGDLTRRRSNVVNNSNLFKLATKRNLQVYIRDQAFDPSQFFALGHPCLRVCTPETEESIHSCLNSPEEQGRSSEVRCNKNHHWLYRKTVADVIEALIGAFIIDSGFKAATAFLTYLGIQVKFESLQVVNACKASMGYIPLSMHIDIPSLEDELKYHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPQLKPGQLTDLRSVSVNNKAFAYVAVGKGFHNFLLCDSHGLSDAIEKYVDYIKGSKAHSGVHGGPKCPKALGDLVESCVGAILVDSGFNLNSVWKIMTSFLENIMKFSSGLQLSPIRDLQELCQSHSLDLQFLKSKTSRMFSVEAKVTGKDVSETASATSMNQKEASRIASQLVFSELKSKGWKPKSKSLEEVLKSTFKAEGKLLGYDETPIDITEAGIEPVMVEGDQCSSFDPEIFRICDDEVVDGYPPHSTSVRQQVPSSSVTGKLGEEIEDHERDCDSQRARMLECVVKGTSRSRLYEFCAANCWKPPSFECCKVEGPDHLKLFTCKVTLEIEDASNMILECVGTPQSRKKEAAEAAAEGAFWYLEKEGHLL 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1700 1691 FunFam Endoribonuclease dicer-like 1 623 719 - -
Prci4g1700 1691 SUPERFAMILY dsRNA-binding domain-like 1612 1688 - -
Prci4g1700 1691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 601 IPR001650 -
Prci4g1700 1691 Pfam Helicase conserved C-terminal domain 456 562 IPR001650 -
Prci4g1700 1691 SUPERFAMILY RNase III domain-like 1256 1421 IPR036389 GO:0004525|GO:0006396
Prci4g1700 1691 Gene3D - 1617 1687 - -
Prci4g1700 1691 SMART riboneu5 1274 1426 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 SMART riboneu5 1069 1238 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 Gene3D Ribonuclease III domain 1062 1232 IPR036389 GO:0004525|GO:0006396
Prci4g1700 1691 MobiDBLite consensus disorder prediction 719 734 - -
Prci4g1700 1691 ProSiteProfiles PAZ domain profile. 923 1022 IPR003100 GO:0005515
Prci4g1700 1691 CDD RIBOc 1275 1425 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 SMART ultradead3 94 291 IPR014001 -
Prci4g1700 1691 SUPERFAMILY dsRNA-binding domain-like 1385 1494 - -
Prci4g1700 1691 Pfam Ribonuclease III domain 1294 1403 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 Pfam Ribonuclease III domain 1087 1218 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 Pfam Dicer dimerisation domain 628 713 - -
Prci4g1700 1691 ProSiteProfiles Ribonuclease III family domain profile. 1259 1403 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 FunFam Endoribonuclease dicer-like 1 435 598 - -
Prci4g1700 1691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 281 IPR014001 -
Prci4g1700 1691 Gene3D Dicer dimerisation domain 623 722 IPR038248 -
Prci4g1700 1691 Gene3D - 98 318 IPR027417 -
Prci4g1700 1691 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1430 1496 IPR014720 -
Prci4g1700 1691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 578 IPR027417 -
Prci4g1700 1691 Gene3D Ribonuclease III domain 1255 1428 IPR036389 GO:0004525|GO:0006396
Prci4g1700 1691 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1610 1686 IPR014720 -
Prci4g1700 1691 SUPERFAMILY RNase III domain-like 1069 1232 IPR036389 GO:0004525|GO:0006396
Prci4g1700 1691 FunFam Endoribonuclease dicer-like 1 1253 1424 - -
Prci4g1700 1691 Gene3D paz domain 919 1020 - -
Prci4g1700 1691 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 628 718 IPR005034 GO:0016891
Prci4g1700 1691 SUPERFAMILY PAZ domain 906 1020 IPR036085 GO:0005515
Prci4g1700 1691 Pfam PAZ domain 923 1043 IPR003100 GO:0005515
Prci4g1700 1691 ProSiteProfiles Ribonuclease III family domain profile. 1052 1218 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 CDD DEXHc_dicer 97 294 - -
Prci4g1700 1691 Gene3D - 436 599 IPR027417 -
Prci4g1700 1691 SMART PAZ_2_a_3 899 1048 IPR003100 GO:0005515
Prci4g1700 1691 Pfam DEAD/DEAH box helicase 100 245 IPR011545 GO:0003676|GO:0005524
Prci4g1700 1691 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1611 1685 - -
Prci4g1700 1691 SMART DRBM_3 1431 1495 IPR014720 -
Prci4g1700 1691 SMART DRBM_3 1611 1685 IPR014720 -
Prci4g1700 1691 MobiDBLite consensus disorder prediction 714 734 - -
Prci4g1700 1691 FunFam Endoribonuclease dicer-like protein 93 328 - -
Prci4g1700 1691 CDD RIBOc 1072 1238 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 PANTHER DICER-RELATED 111 1501 - -
Prci4g1700 1691 ProSitePatterns Ribonuclease III family signature. 1294 1302 IPR000999 GO:0004525|GO:0006396
Prci4g1700 1691 SMART helicmild6 481 564 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1700 Prci-Chr4 15982107 16026069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1700 462 561 Eukaryotic Initiation Factors Gene Family AT1G72730 29.000 4.44e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1700 K11592 - gmx:100797277 2244.93