Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1659 ATGCAGCCTTGTAGCAAAGAAATGCAAGGAATAAACTCTCTCGTGAACTCTTCTCAGATTTCTCTCTCCGACCTCCACCAGATCCAAAATTCTCAGATGAATCCTCCTCCTCACCTTACGAACCCTTCTTCCTCATCTCACTTCGACTCTTCTTCTTCCCACGACGATTTTCTTGACCAAATGCTCTCCAACCTTCCCTCTTCCCCCTGGCCGGACCTGAACCCCAAGCCCTTCTGGGACGACATGCCTCCGCCGTCCCATGCCGCCGATAATGTTGCGTTTCAGTATGATGACCAAACCAGCTTGGCTTCCAAGTTCCGAAACCACCAGATCAGTAGCGACGGTAGCAACCACTGTACCAAGTCGTCGACGGCGGCGCTTATGCTTCAGGCTCAACAGCAGTTTCTGATGTCCCGAGGCGTCGCCGGACCTGGAGACTCGGGCCTCCTTCCGATGCCGTTATCGTTGGGCGGCGGAGACGTTGACCGCTCCCGAAACGACGTCATGGATGGGTCGTCGTTCAAATCTCCCAATCCGGGAGGTGAGAGTTCAGTTCAAGCCCTGTATAACAGATTCGCCGGTTCTCTGCATGGCGGCGGCCAAGTTTCGAATCAGACTCAGCATTTTCCTCATCCACAGAATCTCGGCGGTTCAGGCACCGCAACGAACCAAGCTCCGGCGAGCAGTACTCCGGCACAACCGAGACAAAGAGTTAGGGCTAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAGAGGTTACGAAGAGAGAGAATCGCTGAGAGAATGAAGGCTTTGCAAGAACTCGTTCCCAATGCAAACAAGACAGACAAGGCCTCGATGCTGGATGAGATCATCGATTATGTTAAGTTCCTACAGCTCCAAGTTAAGGTATTGAGTATGAGTAGGTTGGGCGGTGCAGCTGCTGTGGCTCCCCTAGTTGCTGATATGGCCTCCGAGCAGGTAGGCGGTGCGGGAGGGGACTGCATTCAGGCCTCATCGGGCAACGGTGGTGGGGCCGTCTCTGGGAGCTCCAACGGCAACCAAACGCCGCCAGCAACCTCCAACGACAGTATCGCCATGACGGAGCACCAGGTGGCCAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTGCAGGGCAAGGGTCTGTGTCTCATGCCCATCTCCCTCGCCACCGCCATCTCCGCCGCCACCTGTCATTCCAGGACCCCCCTGATCAACACCTCCGGCAACAACAACCACCACCACCAGCAGAAAGGGCCGTCGTCTCCCAGCATGTCGGTATTGACCATGCAGTCGGCGACGGCGGGTAACGGTGTCACGGAGAGCTCCGTCAAGGAGGTGGCCTCCGTTTCGAAGCCGTGA 1377 0.5657 MQPCSKEMQGINSLVNSSQISLSDLHQIQNSQMNPPPHLTNPSSSSHFDSSSSHDDFLDQMLSNLPSSPWPDLNPKPFWDDMPPPSHAADNVAFQYDDQTSLASKFRNHQISSDGSNHCTKSSTAALMLQAQQQFLMSRGVAGPGDSGLLPMPLSLGGGDVDRSRNDVMDGSSFKSPNPGGESSVQALYNRFAGSLHGGGQVSNQTQHFPHPQNLGGSGTATNQAPASSTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEQVGGAGGDCIQASSGNGGGAVSGSSNGNQTPPATSNDSIAMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRTPLINTSGNNNHHHQQKGPSSPSMSVLTMQSATAGNGVTESSVKEVASVSKP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1659 458 SMART finulus 250 299 IPR011598 GO:0046983
Prci4g1659 458 MobiDBLite consensus disorder prediction 197 235 - -
Prci4g1659 458 FunFam Transcription factor bHLH66 241 306 - -
Prci4g1659 458 MobiDBLite consensus disorder prediction 148 249 - -
Prci4g1659 458 Gene3D - 239 301 IPR036638 GO:0046983
Prci4g1659 458 MobiDBLite consensus disorder prediction 29 69 - -
Prci4g1659 458 MobiDBLite consensus disorder prediction 409 458 - -
Prci4g1659 458 Pfam Helix-loop-helix DNA-binding domain 249 294 IPR011598 GO:0046983
Prci4g1659 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 63 398 - -
Prci4g1659 458 MobiDBLite consensus disorder prediction 170 190 - -
Prci4g1659 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983
Prci4g1659 458 MobiDBLite consensus disorder prediction 337 358 - -
Prci4g1659 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 304 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1659 Prci-Chr4 15305814 15309492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1659 231 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.390 9.29e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g1659 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1659 - - cave:132185902 490.73