Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1597 ATGGAGTTTAACTTTCGTCAAGATGATCTCAAGTCACCGTCTTTTCAATTCCCTTCGCCGATACAAAGCCACTTCTCCGACCCCTCCTTGTTGCGAGGTGGTTTCCCGAGTGTCTTTTCAGTGCCGCCGAACACTGAGCAACTGCTGAACCCCAACGTCGCCGGAGAAGATTTACTACGGAAGCTGGAGAAAGAACGAATCCGGCGAGAGATAATCTCCGGCGAGATTGCGAGGAGGCGAATGCTGGAGGAGGAGGTGAGGAGGGAACTGATGCTGGAGAGAGAACTGGCATTCCGACGGAGTTTGGGAGAGAAATTCTTGCTCGACGAGCAAGTAGGGTTGAATCCCAGACTCAACGTGATTCCTTGTCATGATAATCGGCCACTTGAGGAGCGAATCGCATTCCCAAGTAGCAGGCAAACCGTGGCCCAAGTTACGCAACCTGTGAACCCTAGAATCAAACCTGATCCTGACACTAACAAGTATAAATTGATCATGCTGGCCAAGCCAAAACCAGATCTTTATAGAGAAAAGCGGAAAGTTGTAACGCAAGATGCTGATGATGATGATACAGAACCTTCACCTGCTAGCGTGAGGAAAAAATCCAAGGATGACTGGAGCTGTGCACTGTGTAGTGTTAGCGTCACAAGCGAGAAAGCCTTGAATGAACACCGCCAAGGTAAAAAACACAAGGCCAGGGAATATGCACAAAAGAGAAGAATGCAGAAGATAGGTTTGAAGGCAAAAGCAGACGCTCAAGTTCAACCAGAAGTGACCAAGGTAGACACAAATAATCAGACAGTGGTAGGCGAAGATCTTGTGGAAATCAAAACTGAAGGTAAGGAGATGGTGGAGAAAATCCAAACAGAAAATTCAAAGAAGCAAAATAGGACTGAAACAGAAAAGGTAATGATACCAAATGCAGAAAACAAAAGATTCAAGTTTTGGTGTGAACTCTGCCATGTTGGATCTTTCTCTATGATTGTGATGGACAACCATAAGAGAGGGAGAAAACACAACAACCGATTAAAGAGATCTCGTCAAAATGACGGGATTGCTCCTCCCGCATATTCTGGAGTATAG 1083 0.4589 MEFNFRQDDLKSPSFQFPSPIQSHFSDPSLLRGGFPSVFSVPPNTEQLLNPNVAGEDLLRKLEKERIRREIISGEIARRRMLEEEVRRELMLERELAFRRSLGEKFLLDEQVGLNPRLNVIPCHDNRPLEERIAFPSSRQTVAQVTQPVNPRIKPDPDTNKYKLIMLAKPKPDLYREKRKVVTQDADDDDTEPSPASVRKKSKDDWSCALCSVSVTSEKALNEHRQGKKHKAREYAQKRRMQKIGLKAKADAQVQPEVTKVDTNNQTVVGEDLVEIKTEGKEMVEKIQTENSKKQNRTETEKVMIPNAENKRFKFWCELCHVGSFSMIVMDNHKRGRKHNNRLKRSRQNDGIAPPAYSGV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1597 360 Gene3D Classic Zinc Finger 285 348 - -
Prci4g1597 360 SMART ZnF_U1_5 312 346 IPR003604 GO:0003676|GO:0008270
Prci4g1597 360 SMART ZnF_U1_5 203 237 IPR003604 GO:0003676|GO:0008270
Prci4g1597 360 Pfam Zinc-finger of C2H2 type 206 230 - -
Prci4g1597 360 Pfam Zinc-finger of C2H2 type 315 339 - -
Prci4g1597 360 SUPERFAMILY beta-beta-alpha zinc fingers 305 348 IPR036236 -
Prci4g1597 360 MobiDBLite consensus disorder prediction 336 360 - -
Prci4g1597 360 Gene3D Classic Zinc Finger 195 246 - -
Prci4g1597 360 MobiDBLite consensus disorder prediction 181 202 - -
Prci4g1597 360 ProSitePatterns Zinc finger C2H2 type domain signature. 208 230 IPR013087 -
Prci4g1597 360 SUPERFAMILY beta-beta-alpha zinc fingers 197 238 IPR036236 -
Prci4g1597 360 PANTHER OS06G0651300 PROTEIN-RELATED 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1597 Prci-Chr4 13907270 13910571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1597 199 347 C2H2 Transcription Factor Family AT5G61190 25.786 1.13e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1597 - - pcin:129308529 649.047