LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g1591	ATGGAAGCCAGCGCTGGACTCGTCGCCGGTTCTCACAACCGCAACGAGCTCGTCGTCATTCACGGCCATGAAGAGCCCAAGCCTTTGAAGAATTTGGACGGCCAGGTGTGTGAGATATGCGGCGACGACGTCGGAATCACCGTCGACGGCGACTTGTTTGTCGCCTGCAATGAGTGTGGTTTCCCAGTTTGCCGTCCCTGCTATGAGTATGAACGCAGAGAAGGAAGCCAACTCTGCCCACAGTGCAAGACCCGATACAAGCGTCTAAAAGGAAGCCCGAGGGTGGCGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTCAAGATTGCTGCAGACGAGAAGAACAAGCACAACCATATGGCAGAGGCCATGCTGCATGGCAAGATGAGCTATGGAAGAGGTCCTGAAGATGACGACAATGCTCAGTTCCCTCCTGTCATCGCCGGAAACCGCTCCCTTCCGGTGAGCGGAGAATTCCCAATATCATCTCATGGTTACGGAGAGCAGATGCTATCATCTTCTCTGCACAAACGTGTTCATCCTTACCCAGTTTCTGAACCTGGAAGTGCAAGAGGGGAATATGAGAAGAACGAGGATGGCTGGAAAGATAGAATGGAAGACTGGAAACTCCAGCAAGGCAACTTGGGGCCCGAACCTGATGAAGATCCAGATGCAGCCTTGTTAGATGAAGCGAGGCAGCCACTGTCAAGGAAAGTGCCAATAGCATCAAGCAAGGTCAATCCGTACAGGATGGTGATAGTGGCACGTCTTGTGATTCTTGCATTCTTCTTGCGATATCGAATTCTGAACCCAGTTCATGACGCCATGGGCCTATGGCTGACTTCCATTATATGTGAAATCTGGTTTGCTTTCTCCTGGATCCTCGATCAGTTCCCCAAATGGTTCCCCATCGATCGCGAAACTTATCTCGATCGTCTTTCAATCAGGTATGAGAGGGAAGGAGAGCCGAACCTGCTGGCGCCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCGCCGTTGGTGACGGCGAACACGGTACTGTCGATATTGGCGATGGATTATCCGGTGGAGAAGATATCGTGCTACATATCAGACGACGGAGCATCGATGTGCACGTTCGAAGCACTGTCAGAAACTGCAGAATTTGCGAAGAAGTGGGTCCCGTTCTGCAAGAAATTCAGCATTGAGCCTCGAGCTCCTGAGATGTACTTCTCTGAGAAGATGGATTACTTGAAAGATAAAGTTCAGCCCACTTTCGTCAAGGAGCGTCGGGCGATGAAGAGAGAATACGAAGAGTTTAAGGTAAGAGTGAATGCACTTGTGGCGAAAGCCCAGAAGGTTCCACCAGGAGGGTGGATTATGCAGGATGGGACTCCATGGCCAGGCAACAACACCAAAGACCATCCTGGTATGATCCAAGTCTTTCTTGGTCACAGTGGAGGTTGTGACACCGAAGGCAACCTTCTTCCTCGTCTTGTTTATGTCTCCAGAGAGAAAAGGCCAGGTTTTGCTCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTGTCTGCTGTGCTTACAAATGCCCCTTTCATGCTCAACTTGGATTGTGATCACTATGTTAATAATAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGAAAGAAAGTCTGCTACGTCCAATTTCCTCAGAGATTTGATGGCATTGACAGGAACGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTGTACGTGGGGACAGGATGTGTGTTCAGGAGGCAAGCTTTATACGGATACAACCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTAAGCTGTGATTGTTGCCCATGTTTTGGACGCCGAAGGAAGCAAAAGGATGCTAAGGATGGCGCAAATGCAGAGTCTGCAATGCTACAACAAGGGATGGAAGAAGATAAAGAGTTGCTGATGTCTCAGATGAATTTTGAAAAGAGATTTGGGCAATCATCTATTTTTGTGACCTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCTTTGCTCAAAGAAGCAATTCATGTCATAAGCTGTGGCTATGAGGATAAAACAGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACCGAGGATATCCTTACAGGTTTCAAGATGCATTGCCGGGGTTGGAGGTCGATTTACTGCATGCCAAGGAGACCTGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCGCTGGGTTCAATTGAGATCTTCTTCAGTCCTCATTGCCCTGCATGGTATGGCTACAAGGGTGGGAACAAACTCAAGTGGCTCGAGAGATTTGCCTACGTGAACACCACTGTCTACCCCTTCACCTCCCTTCCTCTACTTGCATACTGTATTCTTCCTGCCATCTGCTTGCTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCTTTGTTCTCTTCCATCATCGCGACAGGCCTCCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGCCTTCTTAAGGTGCTAGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAACTTTACACCTTTAAATGGACTACCCTCCTAATCCCTCCAACCACTATACTAATCATCAATATTGTTGGTGTAGTTGCAGGAATCTCAGATGCTATCAACAATGGCTACCAATCCTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTCAAGGGTTTGATGGGTCGGCAAAACCGAACACCGACCATAGTTGTGATATGGTCAGTGCTCTTGGCTTCTATTTTCTCACTACTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGGCCTGATACCAAGATGTGTGGAATCAACTGCTGA	3132	0.4847	MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGITVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVAGDEDEEDVDDIEHEFKIAADEKNKHNHMAEAMLHGKMSYGRGPEDDDNAQFPPVIAGNRSLPVSGEFPISSHGYGEQMLSSSLHKRVHPYPVSEPGSARGEYEKNEDGWKDRMEDWKLQQGNLGPEPDEDPDAALLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNLLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFAKKWVPFCKKFSIEPRAPEMYFSEKMDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTEGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRRKQKDAKDGANAESAMLQQGMEEDKELLMSQMNFEKRFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPRRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC	1043

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g1591	1043	ProSiteProfiles	Zinc finger RING-type profile.	37	83	IPR001841	-
	Prci4g1591	1043	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	491	624	IPR029044	-
	Prci4g1591	1043	FunFam	Cellulose synthase	19	110	-	-
	Prci4g1591	1043	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	236	1010	-	-
	Prci4g1591	1043	Coils	Coil	431	451	-	-
	Prci4g1591	1043	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Prci4g1591	1043	FunFam	Cellulose synthase	450	624	-	-
	Prci4g1591	1043	Pfam	Cellulose synthase	333	1037	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Prci4g1591	1043	MobiDBLite	consensus disorder prediction	183	202	-	-
	Prci4g1591	1043	SUPERFAMILY	RING/U-box	21	105	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g1591	Prci-Chr4	13721580	13728313	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g1591	1	1043	Cell Wall Biosynthesis	AT5G17420	85.536	0.0	1837

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci4g1591	K10999		-	gmx:100815436	1981.07

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci4g1591	4	13721580	13728313	Prci4g1591	4	13721580	13728313	ECH

Showing 1 to 1 of 1 entries