Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1590 ATGGAAGCCAGCGCTGGACTCGTCGCCGGTTCTCACAACCGCAACGAGCTCGTCGTCATTCACGGCCATGAAGAGCCCAAGCCTTTGAAGAATTTGGACGGCCAGGTGTGTGAGATATGCGGCGACGACGTCGGAATCACCGTCGACGGCGACTTGTTTGTCGCCTGCAATGAGTGTGGTTTCCCAGTTTGCCGTCCCTGCTATGAGTATGAACGCAGAGAAGGAAGCCAACTCTGCCCACAGTGCAAGACCCGATACAAGCGTCTAAAAGGAAGCCCGAGGGTGGCGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTCAAGATTGCTGCAGACGAGAAGAACAAGCACAACCATATGGCAGAGGCCATGCTGCATGGCAAGATGAGCTATGGAAGAGGTCCTGAAGATGACGACAATGCTCAGTTCCCTCCTGTCATCGCCGGAAACCGCTCCCTTCCGGTGAGCGGAGAATTCCCAATATCATCTCATGGTTACGGAGAGCAGATGCTATCATCTTCTCTGCACAAACGTGTTCATCCTTACCCAGTTTCTGAACCTGGAAGTGCAAGAGGGGAATATGAGAAGAACGAGGATGGCTGGAAAGATAGAATGGAAGACTGGAAACTCCAGCAAGGCAACTTGGGGCCCGAACCTGATGAAGATCCAGATGCAGCCTTGTTAGATGAAGCGAGGCAGCCACTGTCAAGGAAAGTGCCAATAGCATCAAGCAAGGTCAATCCGTACAGGATGGTGATAGTGGCACGTCTTGTGATTCTTGCATTCTTCTTGCGATATCGAATTCTGAACCCAGTTCATGACGCCATGGGCCTATGGCTGACTTCCATTATATGTGAAATCTGGTTTGCTTTCTCCTGGATCCTCGATCAGTTCCCCAAATGGTTCCCCATCGATCGCGAAACTTATCTCGATCGTCTTTCAATCAGGTATGAGAGGGAAGGAGAGCCGAACCTGCTGGCGCCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCGCCGTTGGTGACGGCGAACACGGTACTGTCGATATTGGCGATGGATTATCCGGTGGAGAAGATATCGTGCTACATATCAGACGACGGAGCATCGATGTGCACGTTCGAAGCACTGTCAGAAACTGCAGAATTTGCGAAGAAGTGGGTCCCGTTCTGCAAGAAATTCAGCATTGAGCCTCGAGCTCCTGAGATGTACTTCTCTGAGAAGATGGATTACTTGAAAGATAAAGTTCAGCCCACTTTCGTCAAGGAGCGTCGGGCGATGAAGAGAGAATACGAAGAGTTTAAGGTAAGAGTGAATGCACTTGTGGCGAAAGCCCAGAAGGTTCCACCAGGAGGGTGGATTATGCAGGATGGGACTCCATGGCCAGGCAACAACACCAAAGACCATCCTGGTATGATCCAAGTCTTTCTTGGTCACAGTGGAGGTTGTGACACCGAAGGCAACCTTCTTCCTCGTCTTGTTTATGTCTCCAGAGAGAAAAGGCCAGGTTTTGCTCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTGTCTGCTGTGCTTACAAATGCCCCTTTCATGCTCAACTTGGATTGTGATCACTATGTTAATAATAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGAAAGAAAGTCTGCTACGTCCAATTTCCTCAGAGATTTGATGGCATTGACAGGAACGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTGTACGTGGGGACAGGATGTGTGTTCAGGAGGCAAGCTTTATACGGATACAACCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTAAGCTGTGATTGTTGCCCATGTTTTGGACGCCGAAGGAAGCAAAAGGATGCTAAGGATGGCGCAAATGCAGAGTCTGCAATGCTACAACAAGCAGGGATGGAAGAAGATAAAGAGTTGCTGATGTCTCAGATGAATTTTGAAAAGAGATTTGGGCAATCATCTATTTTTGTGACCTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCTTTGCTCAAAGAAGCAATTCATGTCATAAGCTGTGGCTATGAGGATAAAACAGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACCGAGGATATCCTTACAGGTTTCAAGATGCATTGCCGGGGTTGGAGGTCGATTTACTGCATGCCAAGGAGACCTGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATCGGCTCAACCAGGTGCTTCGTTGGGCGCTGGGTTCAATTGAGATCTTCTTCAGTCCTCATTGCCCTGCATGGTATGGCTACAAGGGTGGGAACAAACTCAAGTGGCTCGAGAGATTTGCCTACGTGAACACCACTGTCTACCCCTTCACCTCCCTTCCTCTACTTGCATACTGTATTCTTCCTGCCATCTGCTTGCTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCTTTGTTCTCTTCCATCATCGCGACAGGCCTCCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGCCTTCTTAAGGTGCTAGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAACTTTACACCTTTAAATGGACTACCCTCCTAATCCCTCCAACCACTATACTAATCATCAATATTGTTGGTGTAGTTGCAGGAATCTCAGATGCTATCAACAATGGCTACCAATCCTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTCAAGGGTTTGATGGGTCGGCAAAACCGAACACCGACCATAGTTGTGATATGGTCAGTGCTCTTGGCTTCTATTTTCTCACTACTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGGCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3135 0.4848 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGITVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVAGDEDEEDVDDIEHEFKIAADEKNKHNHMAEAMLHGKMSYGRGPEDDDNAQFPPVIAGNRSLPVSGEFPISSHGYGEQMLSSSLHKRVHPYPVSEPGSARGEYEKNEDGWKDRMEDWKLQQGNLGPEPDEDPDAALLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNLLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFAKKWVPFCKKFSIEPRAPEMYFSEKMDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTEGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRRKQKDAKDGANAESAMLQQAGMEEDKELLMSQMNFEKRFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPRRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1590 1044 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Prci4g1590 1044 FunFam Cellulose synthase 19 110 - -
Prci4g1590 1044 Coils Coil 431 451 - -
Prci4g1590 1044 CDD mRING-HC-C4C4_CesA 35 85 - -
Prci4g1590 1044 Pfam Cellulose synthase 333 1038 IPR005150 GO:0016020|GO:0016760|GO:0030244
Prci4g1590 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 346 824 IPR029044 -
Prci4g1590 1044 FunFam Cellulose synthase 450 624 - -
Prci4g1590 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 491 624 IPR029044 -
Prci4g1590 1044 MobiDBLite consensus disorder prediction 183 202 - -
Prci4g1590 1044 SUPERFAMILY RING/U-box 21 105 - -
Prci4g1590 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Prci4g1590 1044 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Prci4g1590 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1590 Prci-Chr4 13721580 13728314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1590 1 1044 Cell Wall Biosynthesis AT5G17420 85.455 0.0 1837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1590 K10999 - gmx:100815436 1980.68