Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1588 ATGGAAGCAAGCACAGGACTTTTTGCAGGGTCTCACAACAGCAATGAGCTTGTGGTCATACAAGGACATGAAGAAGAGCCTAAACCTGTGAAGAACTTAGATGGTCAGCTATGCGAGATATGTGGTGATTCTGTGGGGTATACAGTGGATGAAGATTTGTTTGTGGCCTGTGAAGAATGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAAAGGAGGGAAGGCACTCAAGTTTGCCCTCAGTGCCAGACCAGATACAAGCGTATCAAAGGAAGCCCCAGAGTTGAGGGAGATGAAGACGAAGATGACGTGGATGATATTGAGCATGAGTTCAAAACGGTAGAAAAATACAAGCTCATGGTAGGCCGTGGAGAAGATGACGAGAATGCTAACCCACTACCAGAAACAACACTTGCTTATAATAATCAGAGTGCTTTTAATGGAGCAGGAAATGCAAAGTTGGATGAAAAGACAGAGATAACAGATGACTACTGGAAGCTGCATCAAGGCAATCTGTGGCCTGAAACTGATGCATCAGTTGATCCTGAAAAGGCCATGAGAGACGAAGCTAGACAGCCACTCTCAAGGAAAGTAGCAATACCATCAGGCAGACTCAGCCCTTATAGGATGATGGTTGCGGCTCGGCTTATGATTCTAGTATTGTTCCTTCAGTACAGAATCCTCCACCCAGTGCCTGATGCAGTTGGACTTTGGTTTACATCTGTAATATGTGAGATATGGCTTACATTGTCGTGGATAATAGATCAGATTCCCAGATGGTTTCCCATTGACCGGGAGACATACCTTGATCGGCTTTCACTCAGGTTTGAACCAGAGAATAAGCCGAATTTGTTTCCTCCAATAGATGTCTTTGTCACTACTGTGGACCCAATTAAGGAACCGCCATTAGTTACGGCTAATACTGTTCTTTCAATCTTGGCCATGGATTACCCTCCCAGTAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCTATGCTCACCTTTGAAGCTCTCCAAGAAACTGCAGAGTTTGCACGGAAGTGGGTACCCTTTTGCAAAAAATATTCTACAGAGCCTCGAGCACCAGAGAAGTACTTCTCTGAGAAGATTGATTTTCTAAAGGATAAGGTCCACTCTACTTATGTCAGAGACCGCCGTACAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCACTTGTAGCTAAATCCATGAGAGTTCCTCAAGAAGGGTGGACTATGCAAGATGGGACCCCATGGCCAGGAAACAATACCAATGATCACCCGGGAATGATACAAATTCTTCTTGCTCGCAGTGGAGGTCTTCAAGGAAATGAACTTCCATGTCTTGTCTACCTGTCTCGTGAGAAAAGGCCAGGGTTTCAACACTACAGCAAAGCTGGTGCATTGAATGCATTGCTTCGGGTATCTGCTTTGTTAAGCAATGCTCCTTTTGTGCTGAACTTGGATTGCAATCACTACGTGAATAACAGCAAGGCTGTGAGAGAGGCCATGTGTTTCTTCATGGACCTACAAGTTGGAAAGACCATTTGCTTTGTCCAGTTCCCGCTAAGATTTGACAGCCTTGATAAGCACGATCGTTATGCCAACAGAAATACTGTTTTATTTGATATTAATTTGAGGTGCCTGGATGGAATTCAAGGACCTATTTATATTGGTTCAGGATGCATCTTCAGGAGGAAAGCTTTAAATGGCAGTGATCCTCCGAAGACTTCAAAGCGCCCAAAAATGGTAGGCTGTGGCTGCTGTCCTTGTTTTGGATCACGCAAGAAGCTACAAGTGCACTCTAAGCATGATGGAAATGAAGAAGATGCCCCAGCCGTGACAGGAACAGATGAAGACAACCAGCTTTTAACATCAGAGATGAATTTTGAAAATAAATTTGGGAAATCAGCAGTTTTTGTGAGCTCTTCCATAACAGAAGAGGGTGGTGTTCCTTCTACCTCTAATCAGGCAGCCTTGCTTAAAGAAGCCATTCATGTCATGAGTAGCAGCTATGAAGACAAAACCTTATGGGGATACGAGGTGGGTTGGAACTATGGATCTATATCATCAGATATTCTGACAAGTTTTAAAATGCACTCTCTTGGTTGGAGATCAGTGTATTGCATGCCAAAAAGACCTGCATTCAGGGGTACTGCTCCTATCAACCTTTCAGATCGACTGAGTCAGGTGCTTAGATGGGCAGTTGGATCACTTGAGATCCTTTTCAGCCGCCACTGCCCCATACTGTATACCTTAGGAGGAGGAAAACTTAAGGGGCTTCAAAGAGTTGCTTATATCAACAGCACAGTCTATCCTTTCAGTTCAATACCCCTTCTAATATATTGTCTCCTTCCTGCTGTCTGCCTGCTCACAGACAAGTTCATCACACCATCGATAAGCACCTTTGCAAGTCTTCTCTTTATTGCACTGTTCATCTCAATCTTTGCATCAAGCATACTTGAGTTGAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAGTGAACAATTCTGGGTAATAGGCAGCGTCTCAACACATCTCTTTGCAATAGTGAGAAACTTTCTGAAGGGTGTGTCTAAAGTTGATATTAACTTTGGTGTGGTATCAAAAGTACCAGATGATGGAGAATTCCATGATTTGTACACCTTTAGATGGACAGCGCTGCTAATACCTCCAACCACTATCATAATCATCAACCTTGTTGGTATTGTAGCTGGATTTACAGATGCCATAAACAGTGGTGGACATTCTTGGGGAGCATTACTTGGGAAACTCTTCTTCTCCTTCTGGGTTCTCGTCCACCTTTACCCATTCCTTAAAGGTCTGATGGGAAAACAGAACCGAACACCAACCCTTGTCATCATATGGTCAGTGCTTTTGGCTTCTATCTTCTCCTTGCTTTGGGTAAGAATTGATCCTTTTGTGTTGAAAACAAAAGGACCAGACGTTAAGCAGTGTGGAATCAGTTGCTGA 2994 0.4355 MEASTGLFAGSHNSNELVVIQGHEEEPKPVKNLDGQLCEICGDSVGYTVDEDLFVACEECGFPVCRPCYEYERREGTQVCPQCQTRYKRIKGSPRVEGDEDEDDVDDIEHEFKTVEKYKLMVGRGEDDENANPLPETTLAYNNQSAFNGAGNAKLDEKTEITDDYWKLHQGNLWPETDASVDPEKAMRDEARQPLSRKVAIPSGRLSPYRMMVAARLMILVLFLQYRILHPVPDAVGLWFTSVICEIWLTLSWIIDQIPRWFPIDRETYLDRLSLRFEPENKPNLFPPIDVFVTTVDPIKEPPLVTANTVLSILAMDYPPSKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKYSTEPRAPEKYFSEKIDFLKDKVHSTYVRDRRTMKREYEEFKVRINALVAKSMRVPQEGWTMQDGTPWPGNNTNDHPGMIQILLARSGGLQGNELPCLVYLSREKRPGFQHYSKAGALNALLRVSALLSNAPFVLNLDCNHYVNNSKAVREAMCFFMDLQVGKTICFVQFPLRFDSLDKHDRYANRNTVLFDINLRCLDGIQGPIYIGSGCIFRRKALNGSDPPKTSKRPKMVGCGCCPCFGSRKKLQVHSKHDGNEEDAPAVTGTDEDNQLLTSEMNFENKFGKSAVFVSSSITEEGGVPSTSNQAALLKEAIHVMSSSYEDKTLWGYEVGWNYGSISSDILTSFKMHSLGWRSVYCMPKRPAFRGTAPINLSDRLSQVLRWAVGSLEILFSRHCPILYTLGGGKLKGLQRVAYINSTVYPFSSIPLLIYCLLPAVCLLTDKFITPSISTFASLLFIALFISIFASSILELRWSGVSLEEWWRSEQFWVIGSVSTHLFAIVRNFLKGVSKVDINFGVVSKVPDDGEFHDLYTFRWTALLIPPTTIIIINLVGIVAGFTDAINSGGHSWGALLGKLFFSFWVLVHLYPFLKGLMGKQNRTPTLVIIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGISC 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1588 997 CDD mRING-HC-C4C4_CesA 36 86 - -
Prci4g1588 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 111 IPR013083 -
Prci4g1588 997 Pfam Cellulose synthase 289 991 IPR005150 GO:0016020|GO:0016760|GO:0030244
Prci4g1588 997 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 416 578 IPR029044 -
Prci4g1588 997 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 278 376 IPR029044 -
Prci4g1588 997 ProSiteProfiles Zinc finger RING-type profile. 38 84 IPR001841 -
Prci4g1588 997 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 192 964 - -
Prci4g1588 997 SUPERFAMILY RING/U-box 23 106 - -
Prci4g1588 997 Pfam Zinc-binding RING-finger 28 105 IPR027934 -
Prci4g1588 997 SUPERFAMILY Nucleotide-diphospho-sugar transferases 301 820 IPR029044 -
Prci4g1588 997 Coils Coil 387 407 - -
Prci4g1588 997 FunFam Cellulose synthase 20 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1588 Prci-Chr4 13714335 13719520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g1588 1 997 Cell Wall Biosynthesis AT5G17420 66.731 0.0 1437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1588 K10999 - gmx:100777270 1538.47